SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15473

Length: 1681 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene15473

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ubiquitin-protein ligase/ zinc ion binding protein	-	-	5.0e-14	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	76%
Blast2go	protein	-	-	0.0	70%

Source	GOs	Term	Type	e value	Identity
Blast2go	zinc ion binding	GO:0008270	Molecular Function	0.0	70%
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	70%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NS97

Fln msg:

Fln protein: MNRSRSIRKRNQDLELRLGQSELEKRNTLLTNQTVPLGNFIVVEDDDDEVQLSSTRVFGHDEVRLPSSRLSVQSRNGVSRRTIRVPAIREEDLELRLGLGGTSARFDVVHIPSLSHRCRLHQMTMVPPIVPINISDDGDEEVQRPVKKRKHGNPLNVNDHPVEVKEVKEVKEVNLTCAICMDSMKEETSTICGHIFCRSCIVSAIQIQKKCPTCRRKLSMTNIHRIFLPGRNV*

Protein Length: 235

Fln nts: ATGGGGCAGCAAACGCAGGCAACGAGGGAGAGAGAAAGACAACGAAAAGTAGAATAAGGAAAAGGAAGAGCAAACACAGGTGTGGATGACACGTAGCGGAGCCCGAGTCCCCAGCTAATCCCGCTAACCCCACTGGCACAAAGCCCAAAACATTTTTGGGTCATTAGTTATGATTTAAAATGTTGGCGTGAGACTTATAAATATTGTGAAGACTTTAGCACGTCCGTCGAGCCCTCGGAACGCCTTTTTTCATTCTGTTGTAGAGGCCCATCGAAGCACAGTTGTAATCTTTAAATCCTAATTCGCAGCGACCTCTGAATCTCTTCCTGCATCCATTATCGAACACAGACCGATTTCTTCCAGGCAGTTAGCTTCGAGGAAGGAGACCGACCTAACTCTTTTCTTTTCAAGTTACATCCTCTTCTGTGGGCCATC_-_ATGAACAGATCAAGGTCGATACGAAAGCGGAATCAAGATTTGGAATTGAGGCTAGGGCAGTCTGAGTTAGAAAAACGGAACACATTGTTGACTAACCAAACTGTTCCATTGGGCAACTTTATCGTTGTTGAAGATGATGATGATGAAGTTCAGCTGTCGTCCACAAGAGTATTTGGTCATGATGAAGTTCGGCTACCATCTTCAAGGCTCTCTGTACAATCAAGAAATGGAGTTTCCCGGAGGACTATTCGGGTGCCAGCAATAAGGGAGGAGGATCTGGAGCTACGACTTGGACTTGGAGGAACATCAGCACGTTTTGATGTAGTGCATATACCATCTCTGAGCCATCGATGTCGGCTTCACCAAATGACAATGGTTCCTCCTATTGTGCCAATAAATATCTCTGATGATGGTGATGAAGAAGTTCAAAGACCTGTTAAGAAGAGGAAGCATGGAAACCCATTAAACGTCAACGATCACCCGGTTGAAGTCAAGGAAGTAAAAGAAGTGAAGGAAGTGAATCTAACATGTGCAATATGTATGGATTCCATGAAAGAAGAGACTTCAACAATATGTGGACACATTTTCTGTAGAAGCTGCATTGTAAGTGCAATCCAGATTCAGAAGAAATGTCCGACTTGTCGCAGAAAGCTCTCAATGACTAATATTCACCGAATCTTCCTTCCTGGCCGCAATGTGTGA___TACATTTATCGGGTGCTGCTATTGTTGTGCGTGATTGCTAATTCAATCAATAAGGAAATATTACCTTGATATATAGATCTCTTCCTTACATGGAGGAAAAATTGTGAAGGAATGACTGACTAGGGCCCGCTGACACATTTACAAGTCGATTGACAAGCGATGCTACATAATTGTTGTTATTTATTGGTTTTCTAGGAGTCGCTTAGTAGCCATTGCTTAGGTTTTTTAACGTTTTACAGACAGTTGTCACATTACTACATAGGTTGTCCGTAAGGTTGTACGATTCTTGGAAATTCCCATATTTTTGTATATGTTATTCAGGGAAGGTTATTTCACTATGACTCTTATCACCGAGGAACTATTTCATTATTGCTTTTCACCGTAAGTTATTGTCTCTGACACCTTGTGATGCACATCATTCTAAAAAGGCAGCTTTACACATGGAAGTTGATGAACTTTATTTGCTGTTGTTTCGGTATTAGTTTGGTGCACTTTTATCTATTTTTCTCTATTAAGCACGATTGCTCTATGCAAGAGCATGGAA

Fln Alignment:

sp_v1.1_unigene15473___MNRSRSIRKRNQDLELRLGQSELEKRNTLLTNQTVPLGNFIVVEDDDDEVQLSSTRVFGHDEVRLPSSRLSVQSRNGVSRRTIRVPAIXXXXXXXXXXXXXTSARFDVVHIPSLSH----RCRLHQMTMVPPIVPINISDDGDEEVQRPVKKRKHGNPLNVNDHPXXXXXXXXXXXXNLTCAICMDSMKEETSTICGHIFCRSCIVSAIQIQKKCPTCRRKLSMTNIHRIFLPGRNV
A9NS97_______________MNRSRSTRKRNQDLELRLGHSELEKQSTLLTSQNVALDNLIIVEDDDDEVQLSSSRIFGHNGVRPSSSRISVQSRNGVSRRTIRVPVIKEEDLELRLGPGGTSAHVGVVHIPSLRNGRPERVRIQPVTIVPPIVPINISDDGEEEVQKHVKKRKHGHPSNSNNLP------VEVKEVKLTCAICMDSMKEETSTICGHIFCRSCIMSAIQFQKKCPTCRRKLSMANIHRIFLPGRTV

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
1466			75	25	0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
568	581	GAT GAT GAT GAT GA	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain