SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15471

Length: 1042 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene15471

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cytochrome c oxidase subunit 5C n=8 Tax=Poaceae RepID=COX5C_ORYSJ	-	-	3.0e-11	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%
Blast2go	cox5c_orysj ame: full=cytochrome c oxidase subunit 5c ame: full=cytochrome c oxidase polypeptide vc	-	-	4.79992e-16	86%

Source	ECs	Term	Type	e value	Identity
Blast2go	Cytochrome-c oxidase.	EC:1.9.3.1	-	4.79992e-16	86%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Oxidative phosphorylation	00190		4.79992e-16	86%
Blast2go	Metabolic pathways	01100		4.79992e-16	86%

Source	GOs	Term	Type	e value	Identity
Blast2go	mitochondrial electron transport, cytochrome c to oxygen	GO:0006123	Biological Process	4.79992e-16	86%
Blast2go	aerobic respiration	GO:0009060	Biological Process	4.79992e-16	86%
Blast2go	cytochrome-c oxidase activity	GO:0004129	Molecular Function	4.79992e-16	86%
Blast2go	mitochondrial respiratory chain complex IV	GO:0005751	Cellular Component	4.79992e-16	86%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Cytochrome c oxidase subunit Vc	IPR008432	-	4.79992e-16	86%

Full-Lengther Next Prediction

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
30	66			33	0.997452
80	25			75	0.996473
81		75		25	0.996473
82	75		25		0.996473
83		75	25		0.996473
84	75		25		0.996473
85			25	75	0.996473
105		93	6		0.999264
107	93	6			0.999264
111	6			93	0.999264
112		6		93	0.999264
113	93	6			0.999264
116	93		6		0.999264
117	93	6			0.999264
118	93			6	0.999264
120	93	6			0.999264
124		6		93	0.999264
632	12			75	0.975346
633		12	87		0.992554
642	16	83			0.994512
643	16		83		0.994512
757	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain