SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15468

Length: 2738 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene15468
CGTCGTGACCTTGGCTGTCACGTCGTGACCTTGGCTGTCACTCGAAGGGATCAATACTTGTAGTAATGAATGGATGTTTGACTGGCGATAGAAAGCGCTCATTACCCTCCATTTCCCTGTGCTCGTCTTTAGGAGAAGAGGACGATGAGACCACCATCTGTTAACACAAGAGCAGAGAGTTGCAGGGTCGCTAAAGAATCCGGACTGCAGTGAGCAGACCGAGGCGTTCCAATGCATATGATGCGGCGTATCAAGAGCATTGCGTCGGGCCGATCCTCCATCTCAGATCCGGGAGGAGATGGTGGCATAAAAAGGGCTAAATTTGAACCTGAAACAGAAGTGGAGGCCGTTGGGTTATCTAAGAATGTGGCAGGTACAAGTGAAGTCTCGGAGCAGCATATGGCTGTTGTTTCTGTAGAGCCCTCTGTGGTTGCACATGGTACTTCAGACATGGCAGCAGTTGCAAAAACTAGAAATTCTGGTATTGACCAACTTCCAAAGGAAATGCATGATATGAAAATAAGGGATGATAAAGGCAAGAATCCAGATGACAAGGAAATTGAGGCCACAGTTGTCAATGGCAATGGGACGGAGACTGGCCACATAATTTCAACAACAATAGGTGGTCAAAATGGGCAGCCAAAACAGACCATCAGATACAGGGCAGAACGTATTGTGGGCACTGGGTCATTTGGTATTGTTTTCCAGGCCACATGCTTAGAAACTGGAGAGGCTGTTGCCATAAAAAAAGTGCTGCAGGATAAGAGATACAAGAATAGAGAACTGCAAATTATGCGCATGCTTGACCATCCTAATATTGTTCAACTCAAACATTGTTTCTTTTCAACTACGGACAAAGATGAATTATATCTCAACCTTGTATTGGAGTATGTACCTGAAACAGTGTATCGAGTTACAAAATACTATAGTAGGATGAACCAACGTATGCCATTGATATATGTCAAACTATACACCTATCAGATATGTCGTTCTCTGGCTTACATCCATGGTGTTGTTGGCGTTTGTCATCGTGATATAAAACCTCAAAACTTATTGGTTGACCCCCATACTCACCAGCTTAAACTTTGTGACTTTGGCAGTGCCAAGAAGTTGGTGAAAGGGGAGCCCAATATATCATATATATGTTCGCGTTATTACAGAGCTCCAGAACTTATTTTTGGAGCTACAGAGTATACTACGGCAATAGATATATGGTCATTGGGTTGCGTCTTAGCAGAATTGCTCCTTGGACTGCCTCTGTTTCCTGGAGAAAGTGGCGTTGACCAGTTGGTGGAGATCATCAAGGTTCTGGGGACTCCAACACGAGAGGAGATTAAGTGCATGAATCCAAATTATACAGAGTTTAAATTCCCTCAAATTAAAGCACATCCATGGCACAAGGTATTTCACAAACGCACACCTCCAGAAGCGGTGGATCTTGTATCAAGATTGCTCCAGTATTCTCCAAACCTGCGCTGTACTGCTCTGGAGGCTTGTGCACATCCTTTCTTTGATGAGCTGCGTGATCCCAATACACAATTACCAAATGCTCATCCTCTGCCACTTCTCTTTGACTTTACACCCCAAGAGTTGCAAGGAGCCTCACCAGAGTTATCTCATCGACTTGTGCCTGAGCATGCGAGGAAGCAAAATCCGTCATTAACGGTGTAATTTCAATATATATTTAAAGAAAACATGTCAGTCATTGTGACAAACAACTTAATGAGGCTATCTCCCATTACAATTCAAAACATCCTTTGTCAGGGACAAAAGTGGAGCTTATCAGTGTTAGATTAACCACTGGAGAATTCTATATCAAGTGGGAGGTACAAAGATATTAGCAGCACATATCTCAGTATTGAACCGTGTTGTCAGAGATAGCTAAAATGTGTGGATTGAAAATTTACCTGTACCTTCTTACTTTTTCTCCATTTGTAATATGGGCTTTTTTGTGGTCTTCACATTCATCATAGTTTTGAGTCCCCTGCTGAGATGGCATCCAGGAGATGGTCAGTTATAGAAGACATATATGTTTTGGTAGACAATTGTCGTCTTTTGTAATATGCAATGAAGGCAGATGGAATGGACATGGGCATTATATCATGAAGGGGGCCAGAACAAAGGTCCATGAATTTACCTGATGGAAGATGGCAATTTGATTTACAGATGGTTGGTTTCATGTGAGAAGGTTGCTAAATTTCACTTTAGATTTTAAGCAGATGATATTTGTTGTAATATTTGATGTTTCAACATTTCATGAACAGATATATAGGGTAATATTATAATTCTACGTTGAGGCCTTCAAAATTTGACGAACTAGTCATCTTGAAGAAAAAGCTGGAAGTCATGGTGTTACTGTAGTATGTTTTCTGTCGTGCAGGAACTTTGATGTATCCGATGATTGAAGCACTTCATTCCTGTTGCTTTTTCTTTCTCCCGAGGTGTTTGTTTGAGTGTGGGGCATAAATATTCAGAGACCATTAAATTATGAGCGCATATTTAATCTTTTGGATTTAGTATATAAGAATCATCTGAGATACGAGGTTTATTTGAGCTTTAACCCAGGGTCTAAAAAGCCAGATTGTCTTTATCCTTTAAATTCCGAGCTCAGCAGGGTAATCTATGGTCTGTTTGTGCTTCTTCCTTTCAAAATTTTGTTTTGTAACTCTTGTTCTATGAGCTCTGTATAATCAAAGTTGCAACAGAGCAGACTTAAGTATAATCTATTTGTGTTTTAG

Ace file of the UniGene sp_v1.1_unigene15468

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	GSK3/shaggy-like protein kinase n=1 Tax=Selaginella moellendorffii RepID=D8SX29_SELML	-	-	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	protein	-	-	89%

Source	ECs	Term	Type	e value	Identity
Blast2go	[Tau protein] kinase.	EC:2.7.11.26	-	0.0	89%
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	89%

Source	GOs	Term	Type	Identity
Blast2go	auxin biosynthetic process	GO:0009851	Biological Process	89%
Blast2go	protein phosphorylation	GO:0006468	Biological Process	89%
Blast2go	tau-protein kinase activity	GO:0050321	Molecular Function	89%
Blast2go	ATP binding	GO:0005524	Molecular Function	89%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	89%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	89%
Blast2go	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	89%
Blast2go	Serine/threonine-protein kinase, active site	IPR008271	-	89%
Blast2go	Protein kinase-like domain	IPR011009	-	89%
Blast2go	Protein kinase, ATP binding site	IPR017441	-	89%
Blast2go	Serine/threonine-protein kinase-like domain	IPR017442	-	89%
Blast2go	Tyrosine-protein kinase, catalytic domain	IPR020635	-	89%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUP4

Fln msg: your sequence is longer than subject: 480 - 370

Fln protein: MHMMRRIKSIASGRSSISDPGGDGGIKRAKFEPETEVEAVGLSKNVAGTSEVSEQHMAVVSVEPSVVAHGTSDMAAVAKTRNSGIDQLPKEMHDMKIRDDKGKNPDDKEIEATVVNGNGTETGHIISTTIGGQNGQPKQTIRYRAERIVGTGSFGIVFQATCLETGEAVAIKKVLQDKRYKNRELQIMRMLDHPNIVQLKHCFFSTTDKDELYLNLVLEYVPETVYRVTKYYSRMNQRMPLIYVKLYTYQICRSLAYIHGVVGVCHRDIKPQNLLVDPHTHQLKLCDFGSAKKLVKGEPNISYICSRYYRAPELIFGATEYTTAIDIWSLGCVLAELLLGLPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKVFHKRTPPEAVDLVSRLLQYSPNLRCTALEACAHPFFDELRDPNTQLPNAHPLPLLFDFTPQELQGASPELSHRLVPEHARKQNPSLTV*

Protein Length: 481

Fln nts: CGTCGTGACCTTGGCTGTCACGTCGTGACCTTGGCTGTCACTCGAAGGGATCAATACTTGTAGTAATGAATGGATGTTTGACTGGCGATAGAAAGCGCTCATTACCCTCCATTTCCCTGTGCTCGTCTTTAGGAGAAGAGGACGATGAGACCACCATCTGTTAACACAAGAGCAGAGAGTTGCAGGGTCGCTAAAGAATCCGGACTGCAGTGAGCAGACCGAGGCGTTCCA_-_ATGCATATGATGCGGCGTATCAAGAGCATTGCGTCGGGCCGATCCTCCATCTCAGATCCGGGAGGAGATGGTGGCATAAAAAGGGCTAAATTTGAACCTGAAACAGAAGTGGAGGCCGTTGGGTTATCTAAGAATGTGGCAGGTACAAGTGAAGTCTCGGAGCAGCATATGGCTGTTGTTTCTGTAGAGCCCTCTGTGGTTGCACATGGTACTTCAGACATGGCAGCAGTTGCAAAAACTAGAAATTCTGGTATTGACCAACTTCCAAAGGAAATGCATGATATGAAAATAAGGGATGATAAAGGCAAGAATCCAGATGACAAGGAAATTGAGGCCACAGTTGTCAATGGCAATGGGACGGAGACTGGCCACATAATTTCAACAACAATAGGTGGTCAAAATGGGCAGCCAAAACAGACCATCAGATACAGGGCAGAACGTATTGTGGGCACTGGGTCATTTGGTATTGTTTTCCAGGCCACATGCTTAGAAACTGGAGAGGCTGTTGCCATAAAAAAAGTGCTGCAGGATAAGAGATACAAGAATAGAGAACTGCAAATTATGCGCATGCTTGACCATCCTAATATTGTTCAACTCAAACATTGTTTCTTTTCAACTACGGACAAAGATGAATTATATCTCAACCTTGTATTGGAGTATGTACCTGAAACAGTGTATCGAGTTACAAAATACTATAGTAGGATGAACCAACGTATGCCATTGATATATGTCAAACTATACACCTATCAGATATGTCGTTCTCTGGCTTACATCCATGGTGTTGTTGGCGTTTGTCATCGTGATATAAAACCTCAAAACTTATTGGTTGACCCCCATACTCACCAGCTTAAACTTTGTGACTTTGGCAGTGCCAAGAAGTTGGTGAAAGGGGAGCCCAATATATCATATATATGTTCGCGTTATTACAGAGCTCCAGAACTTATTTTTGGAGCTACAGAGTATACTACGGCAATAGATATATGGTCATTGGGTTGCGTCTTAGCAGAATTGCTCCTTGGACTGCCTCTGTTTCCTGGAGAAAGTGGCGTTGACCAGTTGGTGGAGATCATCAAGGTTCTGGGGACTCCAACACGAGAGGAGATTAAGTGCATGAATCCAAATTATACAGAGTTTAAATTCCCTCAAATTAAAGCACATCCATGGCACAAGGTATTTCACAAACGCACACCTCCAGAAGCGGTGGATCTTGTATCAAGATTGCTCCAGTATTCTCCAAACCTGCGCTGTACTGCTCTGGAGGCTTGTGCACATCCTTTCTTTGATGAGCTGCGTGATCCCAATACACAATTACCAAATGCTCATCCTCTGCCACTTCTCTTTGACTTTACACCCCAAGAGTTGCAAGGAGCCTCACCAGAGTTATCTCATCGACTTGTGCCTGAGCATGCGAGGAAGCAAAATCCGTCATTAACGGTGTAA___TTTCAATATATATTTAAAGAAAACATGTCAGTCATTGTGACAAACAACTTAATGAGGCTATCTCCCATTACAATTCAAAACATCCTTTGTCAGGGACAAAAGTGGAGCTTATCAGTGTTAGATTAACCACTGGAGAATTCTATATCAAGTGGGAGGTACAAAGATATTAGCAGCACATATCTCAGTATTGAACCGTGTTGTCAGAGATAGCTAAAATGTGTGGATTGAAAATTTACCTGTACCTTCTTACTTTTTCTCCATTTGTAATATGGGCTTTTTTGTGGTCTTCACATTCATCATAGTTTTGAGTCCCCTGCTGAGATGGCATCCAGGAGATGGTCAGTTATAGAAGACATATATGTTTTGGTAGACAATTGTCGTCTTTTGTAATATGCAATGAAGGCAGATGGAATGGACATGGGCATTATATCATGAAGGGGGCCAGAACAAAGGTCCATGAATTTACCTGATGGAAGATGGCAATTTGATTTACAGATGGTTGGTTTCATGTGAGAAGGTTGCTAAATTTCACTTTAGATTTTAAGCAGATGATATTTGTTGTAATATTTGATGTTTCAACATTTCATGAACAGATATATAGGGTAATATTATAATTCTACGTTGAGGCCTTCAAAATTTGACGAACTAGTCATCTTGAAGAAAAAGCTGGAAGTCATGGTGTTACTGTAGTATGTTTTCTGTCGTGCAGGAACTTTGATGTATCCGATGATTGAAGCACTTCATTCCTGTTGCTTTTTCTTTCTCCCGAGGTGTTTGTTTGAGTGTGGGGCATAAATATTCAGAGACCATTAAATTATGAGCGCATATTTAATCTTTTGGATTTAGTATATAAGAATCATCTGAGATACGAGGTTTATTTGAGCTTTAACCCAGGGTCTAAAAAGCCAGATTGTCTTTATCCTTTAAATTCCGAGCTCAGCAGGGTAATCTATGGTCTGTTTGTGCTTCTTCCTTTCAAAATTTTGTTTTGTAACTCTTGTTCTATGAGCTCTGTATAATCAAAGTTGCAACAGAGCAGACTTAAGTATAATCTATTTGTGTTTTAG

Fln Alignment:

sp_v1.1_unigene15468___IEATVVNGNGTETGHIISTTIGGQNGQPKQTIRYRAERIVGTGSFGIVFQATCLETGEAVAIKKVLQDKRYKNRELQIMRMLDHPNIVQLKHCFFSTTDKDELYLNLVLEYVPETVYRVTKYYSRMNQRMPLIYVKLYTYQICRSLAYIHGVVGVCHRDIKPQNLLVDPHTHQLKLCDFGSAKKLVKGEPNISYICSRYYRAPELIFGATEYTTAIDIWXXXXXXXXXXXXXXXXXXXXXVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKVFHKRTPPEAVDLVSRLLQYSPNLRCTALEACAHPFFDELRDPNTQLPNAHPLPLLFDFTPQELQGASPELSHRLVPEHARKQNPSLTV
A9NUP4_______________MEATVVDGNGTETGHIIVTTIGGRNGQPKQTISYMAERVVGTGSFGIVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNIVCLKHCFFSTTDKDELYLNLVLEYVPETVYRVAKHYSRMNQRMPLLYVKLYTYQICRALAYIHGGIGVCHRDIKPQNLLVNPHTHQLKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDIWSMGCVLAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEAVDLVSRLLQYSPNLRCTALEACIHPFFDELRDPNTRLPNGRPLPPLFNFKPQELKGATPDLLIKLIPEHARKQCPFLNL

SNPs (tot: 42)

Position	A %	C %	G %	T %	Probability
504	88		11		0.923564
669	90			10	0.90298
670	90			10	0.90298
673		10		90	0.90298
675			10	90	0.90298
678	10			90	0.90298
680			90	10	0.90298
787	11		88		0.923564
792	11			88	0.923564
799		88		11	0.923564
803		88		11	0.923564
804			11	88	0.923564
807	88			11	0.923564
809		88	11		0.923564
2149	90	9			0.999872
2152			90	9	0.999872
2155	87			12	1.0
2156		16		83	1.0
2157			12	87	1.0
2161		8		91	0.999766
2162		8		91	0.999766
2164	87		4		0.999414
2166	86		4	8	0.999539
2171	13		86		1.0
2172		9		90	0.999842
2174		9	90		0.999842
2175	9		90		0.999842
2196	85			4	0.999726
2209		10	90		0.999898
2344	88	11			0.999952
2348	88		11		0.999952
2351	11		88		0.999952
2352		11		88	0.999952
2353		11	88		0.999952
2356	88		11		0.999952
2362		11	88		0.999952
2363	12			87	0.999964
2364	87	12			0.999964
2366		12	87		0.999964
2367	12			87	0.999964
2562	25	75			0.996473
2563		75	25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain