SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15467

Length: 857 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene15467

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Chorismate synthase n=1 Tax=Picea sitchensis RepID=B8LL06_PICSI	-	-	92%
FL-Next	sp=Chorismate synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	74%
Blast2go	chorismate synthase	-	-	80%

Source	ECs	Term	Type	e value	Identity
Blast2go	Chorismate synthase.	EC:4.2.3.5	-	0.0	80%

Source	KEGGs	Term	Identity
Blast2go	Phenylalanine, tyrosine and tryptophan biosynthesis	00400	80%
Blast2go	Biosynthesis of phenylpropanoids	01061	80%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063	80%
Blast2go	Biosynthesis of plant hormones	01070	80%
Blast2go	Metabolic pathways	01100	80%
Blast2go	Biosynthesis of secondary metabolites	01110	80%

Source	GOs	Term	Type	Identity
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	80%
Blast2go	aromatic amino acid family biosynthetic process	GO:0009073	Biological Process	80%
Blast2go	chorismate synthase activity	GO:0004107	Molecular Function	80%
Blast2go	chloroplast	GO:0009507	Cellular Component	80%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Chorismate synthase	IPR000453	-	0.0	80%
Blast2go	Chorismate synthase, conserved site	IPR020541	-	0.0	80%

Full-Lengther Next Prediction

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
221		83	16		0.994512
223		50	16	16	0.988986
742	10			90	0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain