SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15461

Length: 2654 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene15461
ATGGGGCTCTAGAAACCCTTTTCAAACCCTTAAAATATCTCCAAACTCAATAATGGCGCCTCGAGGTTTTCTTTCACCCTAACTTCTTCGCTCCGAATCCATCTTTTCTCTACAAGGGTTTGAAGGCTCGTTTCGGCGTCTTTCTCGCCTGTAACTTCTTTGCTCCGAATCCATCTTTTTTCTACAAGGGTTTGAAGCTCGTTTCGGCGTTTTTCTCGTCTGTAACCTCTTCGCTCCGAATCCATCTTTTCTCCACAAGAGTTTGAAGGCTCGTTTCGGCGTCTTTCTCGTCTGTGTTTTCGTTAAGCTTTCGAGGAGAAATCATGGCGGAATCTGGTGAAGTTGAGACCTTTGCCTTCCAGGCTGAGATCAACCAGCTTTTGAGTCTTATTATCAACACTTTTTACAGCAACAAGGAAATTTTTCTTAGAGAGCTCATCAGCAATTCCTCAGATGCTTTGGACAAGATCCGGTTTGAGAGTCTCACGGACAAGAGTAAGCTGGATGCACAACCAGAACTGTTTATTCACATTATCCCAGACAAGACAAACAATTCGTTGACTATTATCGACAGTGGTATTGGCATGACCAAATCTGATCTCGTGAACAACCTGGGAACCATTGCACGATCTGGCACGAAAGAGTTTATGGAAGCTCTTGCTGCTGGTGCCGATGTTAGCATGATTGGTCAGTTTGGTGTTGGTTTCTACTCTGCGTATTTGGTTGCTGAGAAGGTGGTTGTCACCACCAAACACAATGACGATGAGCAATATATTTGGGAATCGCAGGCCGGCGGATCGTTTACTGTTACCAGAGACACAAGTGGGGAGGTTCTTGGTAGAGGAACCAAAATCACACTGTTGCTCAAAGATGATCAGCTGGAATACCTCGAGGAGAGGCGTTTGAAGGACCTTGTTAAGAAGCATTCAGAGTTCATCAGCTATCCTATATCTCTCTGGACTGAGAAGACTACAGAGAAGGAAGTTTCAGATGATGATGAGGAGGAGGAAAAGGAAAAGAAAGAGGAAGAAGGCACTGTTGAGGAAGTGGATGAAGAAAAGGAGAAGGAAGAGAAGAAGAAGAAGAAAATCAAGGAAGTTTCACATGAATGGAGTCTTGTAAACAAACAGAAGCCTATCTGGATGAGAAAACCAGAGGATATTACGAAGGAAGAATATGCGGCATTTTACAAGAGTCTGACAAATGACTGGGAAGAACACTTGGCAGTGAAACACTTCTCTGTTGAGGGACAGCTTGAGTTCAAGGCCGTCCTCTTTGTTCCCAAGAGGGCACCGTTTGATCTCTTTGATACCAAGAAGAAGTTAAATAACATCAAGCTCTATGTCAGGCGTGTATTCATCATGGACAACTGTGAAGAGTTGATCCCGGAATACCTTAGCTTTGTAAAGGGTGTCGTGGACTCTGAAGACCTTCCTTTGAATATTTCTCGCGAGACTCTCCAACAAAACAAAATACTAAAAGTTATTAGGAAGAATCTTGTCAAGAAGTGTGTAGAGTTGTTCTTTGAAATTGCTGAAAACAAGGAGGATTACAATAAATTCTACGAGGCATTTTCAAAGAACCTTAAGCTTGGGATTCACGAGGATAGCCAGAACAGATCCAAGATTGCTGACTTGCTCAGGTACCACTCTACTAAGAGTGGAGATGAGATGACCAGCTTGAAGGATTATGTGACGAGAATGAAGGAGGGTCAAAAGGATATCTATTACATAACTGGTGAAAGCAAGAAGGCTGTTGAGAACTCTCCATTCTTGGAGCGTCTGAAGAAGAAGGGTTATGAGGTTCTTTTCATGGTTGACGCTATTGATGAATATGCCATTGGGCAATTGAAGGAATACGAAGGCAAAAAATTGGTGTCTGCCACAAAGGAGGGGTTGAAATTAGAGGAAAGTGAAGATGAGAAGAAGAAAAAGGAAGAGTTGAAGTCCCTATTTGATGGTCTCTGCAAAGTTATCAAGGATATTCTCGGGGACAAGGTGGAGAAAGTTGTTGTCTCTGACCGTGTTGTGGATTCTCCTTGCTGTTTGGTTACTGGAGAGTATGGATGGACTGCTAACATGGAAAGAATCATGAAGGCCCAGGCTTTGAGAGACAGTAGCATGTCAAGCTACATGTCAAGCAAGAAGACCATGGAAATTAATCCCGAGAATCCTATCATGGATGAGCTTAGAAAGAGGGCTGAAGCAGACAAAAATGACAAATCTGTCAAGGATTTAGTTCTATTGATGTACGAAACTGCTTTGTTGACATCAGGGTTTAGCCTTGATGATCCTAATACTTTTGGTAACAGGATTCACAGGATGATGAAGCTGGGTCTAAGTATTGATGAGGATGAAAGTCTTCCTGACACCGATGCTGAAATGCCTCCTCTTGAAGAGGCTGCTGATGCGGAGGGCAGCAAGATGGAGGAGGTGGATTAATTCAGTGTTTTATTAGCTTTTTGTTTAAATAGTTACATTGGATCAGATTTTGTAGTGGTAATTTCGGATTTTTTTTCCGAGCTTTTTTGCCTTTAAAAACTGGTTTTTTGATTTAGGTCGACAAGAATGCATCAGAAATTCAAGTGATGCAAGCTTCGCAATTATAATTTAAGCGTCATATTTTTTCATAGCAATTTTTATTTGCAAGTTTTT

Ace file of the UniGene sp_v1.1_unigene15461

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	pco153543(105), HSP90-1; LOC100384473; K04079 molecular chaperone HtpG	-	-	79%
FL-Next	sp=Heat shock protein 90-2; Arabidopsis thaliana (Mouse-ear cress).	-	-	88%
Blast2go	protein	-	-	94%

Source	GOs	Term	Type	Identity
Blast2go	protein folding	GO:0006457	Biological Process	94%
Blast2go	response to stress	GO:0006950	Biological Process	94%
Blast2go	unfolded protein binding	GO:0051082	Molecular Function	94%
Blast2go	ATP binding	GO:0005524	Molecular Function	94%
Blast2go	cytoplasm	GO:0005737	Cellular Component	94%

Source	InterPros	Term	Type	Identity
Blast2go	Heat shock protein Hsp90	IPR001404	-	94%
Blast2go	ATPase-like, ATP-binding domain	IPR003594	-	94%
Blast2go	Heat shock protein Hsp90, conserved site	IPR019805	-	94%
Blast2go	Ribosomal protein S5 domain 2-type fold	IPR020568	-	94%
Blast2go	Heat shock protein Hsp90, N-terminal	IPR020575	-	94%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: P55737

Fln msg:

Fln protein: MAESGEVETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLTIIDSGIGMTKSDLVNNLGTIARSGTKEFMEALAAGADVSMIGQFGVGFYSAYLVAEKVVVTTKHNDDEQYIWESQAGGSFTVTRDTSGEVLGRGTKITLLLKDDQLEYLEERRLKDLVKKHSEFISYPISLWTEKTTEKEVSDDDEEEEKEKKEEEGTVEEVDEEKEKEEKKKKKIKEVSHEWSLVNKQKPIWMRKPEDITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAVLFVPKRAPFDLFDTKKKLNNIKLYVRRVFIMDNCEELIPEYLSFVKGVVDSEDLPLNISRETLQQNKILKVIRKNLVKKCVELFFEIAENKEDYNKFYEAFSKNLKLGIHEDSQNRSKIADLLRYHSTKSGDEMTSLKDYVTRMKEGQKDIYYITGESKKAVENSPFLERLKKKGYEVLFMVDAIDEYAIGQLKEYEGKKLVSATKEGLKLEESEDEKKKKEELKSLFDGLCKVIKDILGDKVEKVVVSDRVVDSPCCLVTGEYGWTANMERIMKAQALRDSSMSSYMSSKKTMEINPENPIMDELRKRAEADKNDKSVKDLVLLMYETALLTSGFSLDDPNTFGNRIHRMMKLGLSIDEDESLPDTDAEMPPLEEAADAEGSKMEEVD*

Protein Length: 707

Fln nts: ATGGGGCTCTAGAAACCCTTTTCAAACCCTTAAAATATCTCCAAACTCAATAATGGCGCCTCGAGGTTTTCTTTCACCCTAACTTCTTCGCTCCGAATCCATCTTTTCTCTACAAGGGTTTGAAGGCTCGTTTCGGCGTCTTTCTCGCCTGTAACTTCTTTGCTCCGAATCCATCTTTTTTCTACAAGGGTTTGAAGCTCGTTTCGGCGTTTTTCTCGTCTGTAACCTCTTCGCTCCGAATCCATCTTTTCTCCACAAGAGTTTGAAGGCTCGTTTCGGCGTCTTTCTCGTCTGTGTTTTCGTTAAGCTTTCGAGGAGAAATC_-_ATGGCGGAATCTGGTGAAGTTGAGACCTTTGCCTTCCAGGCTGAGATCAACCAGCTTTTGAGTCTTATTATCAACACTTTTTACAGCAACAAGGAAATTTTTCTTAGAGAGCTCATCAGCAATTCCTCAGATGCTTTGGACAAGATCCGGTTTGAGAGTCTCACGGACAAGAGTAAGCTGGATGCACAACCAGAACTGTTTATTCACATTATCCCAGACAAGACAAACAATTCGTTGACTATTATCGACAGTGGTATTGGCATGACCAAATCTGATCTCGTGAACAACCTGGGAACCATTGCACGATCTGGCACGAAAGAGTTTATGGAAGCTCTTGCTGCTGGTGCCGATGTTAGCATGATTGGTCAGTTTGGTGTTGGTTTCTACTCTGCGTATTTGGTTGCTGAGAAGGTGGTTGTCACCACCAAACACAATGACGATGAGCAATATATTTGGGAATCGCAGGCCGGCGGATCGTTTACTGTTACCAGAGACACAAGTGGGGAGGTTCTTGGTAGAGGAACCAAAATCACACTGTTGCTCAAAGATGATCAGCTGGAATACCTCGAGGAGAGGCGTTTGAAGGACCTTGTTAAGAAGCATTCAGAGTTCATCAGCTATCCTATATCTCTCTGGACTGAGAAGACTACAGAGAAGGAAGTTTCAGATGATGATGAGGAGGAGGAAAAGGAAAAGAAAGAGGAAGAAGGCACTGTTGAGGAAGTGGATGAAGAAAAGGAGAAGGAAGAGAAGAAGAAGAAGAAAATCAAGGAAGTTTCACATGAATGGAGTCTTGTAAACAAACAGAAGCCTATCTGGATGAGAAAACCAGAGGATATTACGAAGGAAGAATATGCGGCATTTTACAAGAGTCTGACAAATGACTGGGAAGAACACTTGGCAGTGAAACACTTCTCTGTTGAGGGACAGCTTGAGTTCAAGGCCGTCCTCTTTGTTCCCAAGAGGGCACCGTTTGATCTCTTTGATACCAAGAAGAAGTTAAATAACATCAAGCTCTATGTCAGGCGTGTATTCATCATGGACAACTGTGAAGAGTTGATCCCGGAATACCTTAGCTTTGTAAAGGGTGTCGTGGACTCTGAAGACCTTCCTTTGAATATTTCTCGCGAGACTCTCCAACAAAACAAAATACTAAAAGTTATTAGGAAGAATCTTGTCAAGAAGTGTGTAGAGTTGTTCTTTGAAATTGCTGAAAACAAGGAGGATTACAATAAATTCTACGAGGCATTTTCAAAGAACCTTAAGCTTGGGATTCACGAGGATAGCCAGAACAGATCCAAGATTGCTGACTTGCTCAGGTACCACTCTACTAAGAGTGGAGATGAGATGACCAGCTTGAAGGATTATGTGACGAGAATGAAGGAGGGTCAAAAGGATATCTATTACATAACTGGTGAAAGCAAGAAGGCTGTTGAGAACTCTCCATTCTTGGAGCGTCTGAAGAAGAAGGGTTATGAGGTTCTTTTCATGGTTGACGCTATTGATGAATATGCCATTGGGCAATTGAAGGAATACGAAGGCAAAAAATTGGTGTCTGCCACAAAGGAGGGGTTGAAATTAGAGGAAAGTGAAGATGAGAAGAAGAAAAAGGAAGAGTTGAAGTCCCTATTTGATGGTCTCTGCAAAGTTATCAAGGATATTCTCGGGGACAAGGTGGAGAAAGTTGTTGTCTCTGACCGTGTTGTGGATTCTCCTTGCTGTTTGGTTACTGGAGAGTATGGATGGACTGCTAACATGGAAAGAATCATGAAGGCCCAGGCTTTGAGAGACAGTAGCATGTCAAGCTACATGTCAAGCAAGAAGACCATGGAAATTAATCCCGAGAATCCTATCATGGATGAGCTTAGAAAGAGGGCTGAAGCAGACAAAAATGACAAATCTGTCAAGGATTTAGTTCTATTGATGTACGAAACTGCTTTGTTGACATCAGGGTTTAGCCTTGATGATCCTAATACTTTTGGTAACAGGATTCACAGGATGATGAAGCTGGGTCTAAGTATTGATGAGGATGAAAGTCTTCCTGACACCGATGCTGAAATGCCTCCTCTTGAAGAGGCTGCTGATGCGGAGGGCAGCAAGATGGAGGAGGTGGATTAA___TTCAGTGTTTTATTAGCTTTTTGTTTAAATAGTTACATTGGATCAGATTTTGTAGTGGTAATTTCGGATTTTTTTTCCGAGCTTTTTTGCCTTTAAAAACTGGTTTTTTGATTTAGGTCGACAAGAATGCATCAGAAATTCAAGTGATGCAAGCTTCGCAATTATAATTTAAGCGTCATATTTTTTCATAGCAATTTTTATTTGCAAGTTTTT

Fln Alignment:

sp_v1.1_unigene15461___EVETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLTIIDSGIGMTKSDLVNNLGTIARSGTKEFMEALAAGADVSMIGQFGVGFYSAYLVAEKVVVTTKHNDDEQYIWESQAGGSFTVTRDTSGEVLGRGTKITLLLKDDQLEYLEERRLKDLVKKHSEFISYPISLWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSHEWSLVNKQKPIWMRKPEDITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAVLFVPKRAPFDLFDTKKKLNNIKLYVRRVFIMDNCEELIPEYLSFVKGVVDSEDLPLNISRETLQQNKILKVIRKNLVKKCVELFFEIAENKEDYNKFYEAFSKNLKLGIHEDSQNRSKIADLLRYHSTKSGDEMTSLKDYVTRMKEGQKDIYYITGESKKAVENSPFLERLKKKGYEVLFMVDAIDEYAIGQLKEYEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXFDGLCKVIKDILGXXXXXXXXXXXXXXXPCCLVTGEYGWTANMERIMKAQALRDXXXXXXXXXKKTMEINPENPIMDELRKRAEADKNDKSVKDLVLLMYETALLTSGFSLDDPNTFGNRIHRMMKLGLSIDEDESLPDTDAEMPPLEEAADAEGSKMEEVD
P55737_______________DAETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIHIIPDKTNNTLTIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVSMIGQFGVGFYSAYLVADKVVVTTKHNDDEQYVWESQAGGSFTVTRDTSGETLGRGTKMVLYLKEDQLEYLEERRLKDLVKKHSEFISYPISLWIEKTIEKEISDDEEEEEKKDEEGKVEEVDEEKEKEEKKKKKIKEV--SHEWDLVNKQKPIWMRKPEEINKEEYAAFYKSLSNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTKKKPNNIKLYVRRVFIMDNCEDIIPEYLGFVKGIVDSEDLPLNISRETLQQNKILKVIRKNLVKKCLELFFEIAENKEDYNKFYEAFSKNLKLGIHEDSQNRTKIAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIFYITGESKKAVENSPFLEKLKKKGIEVLYMVDAIDEYAIGQLKEFEGKKLVSATKEGLKLDETEDEKKKKEELKEKFEGLCKVIKDVLGDKVEKVIVSDRVVDSPCCLVTGEYGWTANMERIMKAQALRDSSMAGYMSSKKTMEINPENSIMDELRKRADADKNDKSVKDLVLLLFETALLTSGFSLDEPNTFGSRIHRMLKLGLSIDDDDAV-EADAEMPPLEDDADAEGSKMEEVD

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
1478	10	90			0.90298
1479		90		10	0.90298
2163	86	8			0.999539
2164	91		8		0.999807
2167		91	8		0.999807
2168		90		9	0.999842
2171		9	90		0.999842
2172	90	9			0.999842
2173	90			9	0.999842
2175		90	9		0.999842
2182		9		90	0.999872
2183			85	9	0.999726
2184		9	90		0.999872
2268		2		97	0.969538
2340		13		86	1.0
2414	25		73		1.0
2445			1	92	1.0
2447		20		79	1.0
2449	11		88		1.0
2452			2	90	0.999998
2461		81		7	1.0
2462		13		68	1.0
2472	88		11		0.999937
2512	88			11	0.923564
2514	12			87	0.992554
2554	16			83	0.994512
2560			16	83	0.994512
2565		85		14	0.993533

SSRs (tot: 1)

Start position	End position	Sequence	Length
1072	1087	AGA AGA AGA AGA AGA A	16

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain