SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15459

Length: 1665 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene15459

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	transcription initiation factor iib, putative; K03124 transcription initiation factor TFIIB	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	68%
Blast2go	transcription initiation factor iib	-	-	80%

Source	GOs	Term	Type	Identity
Blast2go	translational initiation	GO:0006413	Biological Process	80%
Blast2go	transcription initiation, DNA-dependent	GO:0006352	Biological Process	80%
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	80%
Blast2go	translation initiation factor activity	GO:0003743	Molecular Function	80%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	80%
Blast2go	protein binding	GO:0005515	Molecular Function	80%
Blast2go	RNA polymerase II transcription factor activity	GO:0003702	Molecular Function	80%
Blast2go	cytoplasm	GO:0005737	Cellular Component	80%
Blast2go	nucleus	GO:0005634	Cellular Component	80%

Source	InterPros	Term	Type	Identity
Blast2go	Transcription factor TFIIB	IPR000812	-	80%
Blast2go	Zinc finger, TFIIB-type	IPR013137	-	80%
Blast2go	Transcription factor TFIIB, cyclin-related	IPR013150	-	80%
Blast2go	Cyclin-like	IPR013763	-	80%
Blast2go	Transcription factor TFIIB, conserved site	IPR023486	-	80%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LMH3

Fln msg:

Fln protein: MDKPYCSDCKRMTEVVFDQSAGDTVCMDCGLVLEAHSVDESSEWRTFSGEQSGADPNRVGEASNPLLGNQVALTTLIAKGNASNTDLSLLGRWQNRGTNSDRSLLTAFATIATMADRLGLVSTIKDRASEIYKKVEDIKSIRGRSQDSMIAACLYIACRQEDKPRTFKEICCAANGATKREIGRATKFIVKQLEEEMGITMDMGTIHAADLLRRFCSHLGMNNQATRAAIETVKSIEALDIRKSPISVAAAAIYMVSQISDAKLSLKAISDVAGVAEVTIRNSYKELFPHARKLLPNWFAQEQQLKNLSSF*

Protein Length: 313

Fln nts: ACCGAAGCAAAGGAGAAAGGAATGCACGAATATTATATTTGGTAACGGTATGATGTGAGGGCGTCGTGACCTTGGCTGTCACTCAGTTTTTAGTCTGTTACGAGTTGTTATGGGATGGGAGGCACTGTCGGCGTTGCCCTGCCCTGCTCTGAAAGGGTGTATAGCCATCCATTCCATTTCATTGAGGTAAGAAAGGAAG_-_ATGGATAAGCCGTATTGCTCGGATTGCAAGCGAATGACAGAGGTGGTGTTTGATCAATCGGCAGGAGACACAGTGTGCATGGATTGCGGGTTGGTGTTGGAAGCTCATTCTGTGGACGAGTCATCGGAGTGGAGGACTTTCTCTGGAGAGCAGTCGGGTGCGGATCCAAACAGAGTTGGAGAGGCAAGCAATCCTTTATTGGGGAACCAGGTCGCCCTTACAACGCTCATTGCCAAAGGCAATGCATCCAACACTGACTTGTCTCTTCTCGGCCGCTGGCAAAACAGGGGAACCAATTCAGACCGCTCTCTGCTTACTGCATTCGCCACTATTGCCACTATGGCAGATCGGTTGGGTCTTGTCAGCACAATCAAGGATCGAGCTAGTGAAATATACAAGAAGGTGGAAGATATCAAATCTATACGAGGAAGAAGTCAAGATTCAATGATAGCGGCTTGCTTATACATAGCTTGCAGGCAGGAGGACAAGCCCCGAACATTCAAAGAGATTTGTTGTGCAGCTAATGGTGCAACTAAACGAGAAATAGGTCGTGCAACAAAGTTTATTGTAAAACAATTAGAGGAAGAAATGGGAATAACAATGGACATGGGCACAATTCATGCAGCAGATTTATTGAGAAGATTTTGTTCTCATCTTGGGATGAACAACCAAGCAACCAGAGCTGCCATTGAAACAGTAAAAAGTATAGAAGCTCTTGACATTAGGAAAAGCCCTATATCCGTTGCTGCAGCAGCAATTTACATGGTTTCACAGATTTCAGATGCAAAGTTATCGCTAAAAGCAATTTCTGATGTTGCTGGTGTTGCAGAGGTCACAATCAGAAACTCTTATAAGGAGTTATTTCCACATGCCAGGAAATTGCTTCCTAATTGGTTTGCCCAAGAACAACAACTGAAAAACTTATCTTCTTTTTAA___TTGGTTTTATTTCCATTGAAATAAGGAATTTGTAAAATATGGTATGCGCTGACCTGGCCTTCTCTTCTATGAAAGGGATCAGTAGACAACCTGGTTTTCAATATCTCATTTTCAGCTGTAGTTAATTTTTAAGATTAAATGGAAACTACACTTTGGTCTATGTGTCTATGTAGCCTGTTCCGATTGATCCATGTTTATTTATGTAGCCTATTCCAATTTTTGTTACAATTTGAGATATATTCTTCACTGGGCATGGCTAAACTTTGACTAAGACTGGTCAGCAGATAATTTTTTGGATGGCATACTAAAGAAATGACTGGGCTGCAGCGCCCACAGTTTATATTTCACAAAATTGGGTTGTAGCACAGATTTGTGAGTCTAAAATTCTATTTCTTCCACTATAGGTTGAAAAATCCATATTGTAGCCTGTAAGTTCAAAAATCTGTTTCTTCTATTGTAGGTTGCAAAATTCGTATTGTAGCTTCTAATAATGTTAAACTGGAATTTACAATTTCAGAAAAGATCAATTA

Fln Alignment:

sp_v1.1_unigene15459___MDKPYCSDCKRMTEVVFDQSAGDTVCMDCGLVLEAHSVDESSEWRTFSGEQSGADPNRVGEASNPLLGNQVALTTLIAKGNASNTDL--SLLGRWQNRGTNSDRSLLTAFATIATMADRLGLVSTIKDRASEIYKKVEDIKSIRGRSQDSMIAACLYIACRQEDKPRTFKEICCAANGATKREIGRATKFIVKQLEEEMGITMDMGTIHAADLLRRFCSHLGMNNQATRAAIETVKSIEALDIRKSPISVAAAAIYMVSQISDAKLSLKAISDVAGVAEVTIRNSYKELFPHARKLLPNWFAQEQQLKNL
B8LMH3_______________IDTVSCPDCKKQTEVVFDHSAGDTVCVECGLVLEAHSIDETSEWRTFANETGDNDPVRVGGPSNPLLTDG-GLSTVISKPNGASGDFLSSSLGRWQNRGSNPDRSLIMAFKTIGTMSDRLGLVATIKDRANEIYKKVEDSKSIRGRNQDAILAACLYIACRQEDKPRTVKEICSVANGASKKEVGRAKEFIVKQLEEEMGKSMEMGTIHAGDFLRRFCSHLGMGHQAVKAATEAVKKSEELDIRRSPISIAAAAIYMISQLSEEKKLLRDISRATGVAEGTIRNSYKDLYPHAARLIPDWFAKEEDLKNL

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
301			16	83	0.994512
1060	96	3			0.993591
1063		3		96	0.993591
1064	96		4		0.99411
1066			4	96	0.99411
1067	4			93	0.970804
1070	95			4	0.994598
1075		95	4		0.994598
1077	95			4	0.994598
1079			95	4	0.994598
1080	95	4			0.994598
1082	93	4			0.970804
1084		4		95	0.994598
1085	4		95		0.994598
1123	82	4			1.0
1391		54	45		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain