SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15449

Length: 1575 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene15449

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	SPFH domain-containing protein 2, putative n=1 Tax=Ricinus communis RepID=B9REE7_RICCO	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	band 7 family protein	-	-	85%

Source	GOs	Term	Type	Identity
Blast2go	ER-associated protein catabolic process	GO:0030433	Biological Process	85%
Blast2go	protein binding	GO:0005515	Molecular Function	85%
Blast2go	nucleolus	GO:0005730	Cellular Component	85%
Blast2go	endoplasmic reticulum membrane	GO:0005789	Cellular Component	85%
Blast2go	plasma membrane	GO:0005886	Cellular Component	85%
Blast2go	plastid	GO:0009536	Cellular Component	85%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PR17

Fln msg:

Fln protein: MDNTQGRVGASGTPRAPGDTQATVFFVLAVAICFMLYIPLSADGHNLDIVHQVPEGHVGVYWRGGALLKTITSPGFHLKMPLITRYEPIQVTIQTDKVRDIPCGTKGGVMIFFDKIEVVNRLRKEYVYDTLLNYGVTYDKTWIYDKIHHEINQFCSSHTLQEVYTDMFDQIDEQMKEAIQADCTRYAPGIEIIGVRVTKPTIPATIARNYERMEEERTKVLIAIEKQKVLEKEVETQKKMAVTEAEKDAQVSRIVMAQKLTEKESIKMQQEIENEMYLARERSLADSYFYKVMKEAEANRLKLTPEYLELRFIEAIANNTKMFFGDKVPNMIFDQRLLGNFLAGTVNSMSKQTEKLTQ*

Protein Length: 360

Fln nts: CGTCGTGACCTTGGCTGTCACGCAGAGTCTATGCCATGCGGATTTTCCTCGAAAGGCTTTCGTAAAGATCCTATACGTCGTGACCTTGGCTGTCACTCAGGGAATGCCTTTTGATACCTTCTTCCGCTCTGAAGGAGGACGTTAAATGGTATACATCTGTGCACAAATAGAATCATAATTTGAACGATA_-_ATGGATAATACTCAGGGCAGGGTTGGCGCAAGTGGCACCCCAAGAGCTCCAGGGGACACTCAAGCCACTGTTTTCTTTGTACTGGCCGTGGCAATTTGTTTCATGCTATATATTCCTTTATCAGCAGATGGTCACAATCTAGACATTGTACATCAAGTTCCTGAAGGACATGTGGGAGTATACTGGAGAGGTGGTGCGCTTTTGAAAACAATTACTAGCCCAGGGTTCCACCTTAAGATGCCATTAATAACTCGGTATGAACCAATTCAAGTGACCATTCAAACAGATAAGGTCAGAGACATACCATGTGGTACCAAGGGGGGAGTAATGATTTTCTTTGATAAGATTGAGGTAGTTAACCGTCTTCGTAAAGAATATGTCTATGACACATTGCTGAATTATGGTGTGACCTATGACAAGACTTGGATATATGACAAAATTCATCATGAAATCAATCAATTTTGCAGTTCACACACTTTACAGGAAGTGTACACCGACATGTTTGATCAGATTGATGAGCAAATGAAGGAAGCAATTCAGGCTGATTGTACGCGTTATGCTCCTGGCATTGAGATTATTGGTGTAAGGGTAACGAAACCCACAATTCCAGCAACCATTGCTCGAAATTATGAACGAATGGAGGAAGAGCGCACTAAGGTTTTGATAGCAATTGAGAAGCAGAAGGTGCTAGAAAAGGAGGTTGAAACACAAAAGAAAATGGCTGTTACAGAAGCTGAGAAAGATGCACAAGTCAGCAGAATTGTCATGGCACAAAAGTTGACAGAAAAAGAGAGCATAAAAATGCAACAAGAAATAGAGAATGAAATGTATTTGGCGCGTGAAAGAAGTCTTGCAGATTCTTACTTCTACAAGGTCATGAAGGAAGCTGAAGCAAACAGACTAAAACTTACTCCAGAATATTTGGAACTCAGGTTTATTGAGGCTATTGCGAATAATACAAAAATGTTTTTTGGGGACAAGGTGCCAAACATGATTTTTGATCAACGACTATTAGGGAACTTTCTAGCTGGGACTGTAAACAGCATGTCAAAACAGACTGAGAAGTTGACACAATAA___GCTGTCAGGTCACATGTCTTGTCTTCACAAGAGGGTCCTTCCTCAAATTGGACTGGCAAAGATGACATGTTCAGTAACCTTGTATGCCTTTGCTTACAAATTTTCAAGTCAATTACCATAAACACTGCAACAGTGAATTGCTAAAGCTAGCTGAAAATATAATTATTTTTGTCAGGATATGTCTGATCTTATCACATTTTAACCTCTGTTTTCATGTACATTGATTTAAGCCATGCAATTCAGAATATAATTTTAAACTTGCAATTTATCAGTATAATGAAGACCCAGCAATCTCAAGTTTTAGTCATC

Fln Alignment:

sp_v1.1_unigene15449___MDNTQGRVGASGTPRAPGDTQATVFFVLAVAICFMLYIPLSADGHNLDIVHQVPEGHVGVYWRGGALLKTITSPGFHLKMPLITRYEPIQVTIQTDKVRDIPCGTKGGVMIFFDKIEVVNRLRKEYVYDTLLNYGVTYDKTWIYDKIHHEINQFCSSHTLQEVYTDMFDQIDEQMKEAIQADCTRYAPGIEIIGVRVTKPTIPATIARNYERMEEERTKVLIAIEKQKVLEKEVETQKKMAVTEAEKDAQVSRIVMAQKLTEKESIKMQQEIENEMYLARERSLADSYFYKVMKEAEANRLKLTPEYLELRFIEAIANNTKMFFGDKVPNMIFDQRLLGNFLAGTVNSMSKQTEKLTQ
C0PR17_______________MDNIQGRVGASGTPRAPWDTQVSIFRVLVLAICFMLYIPLSADGHSLDIVHQVPEGHVGVYWRGGALLKTVTSPGFHLKMPLITRYEPIQVTIQTDKVKDIPCGTKGGVMIFFDKIEVVNRLRKEYVYDTLMNYGVTYDKTWIYDKIHHEINQFCSSHTLQEVYTDMFDQIDEQMKEAIQADCTRYAPGIEIIGVRVTKPTIPATIARNYERMEEERTKVLIAIEKQKVLEKEVETQKKMAVTEAEKDAHVSKIVMAQKLTEKESIKMQQEIENEMYLARERSLADSYFYKVVKEAEANKLKLTPEYLELRFIEAIANNTKMFFGNKVPNMVFDQRLLGNFLSETVNSRSKQSEKMTQ

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
1137	10	90			0.90298
1139	90		10		0.90298
1140			10	90	0.90298
1141			10	90	0.90298
1162		16		83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain