SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15444

Length: 1057 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene15444

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Peroxiredoxin n=4 Tax=Papilionoideae RepID=B3GV28_PEA	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	type ii peroxiredoxin	-	-	89%

Source	ECs	Term	Type	e value	Identity
Blast2go	Peroxiredoxin.	EC:1.11.1.15	-	0.0	89%

Source	KEGGs	Term	Type	Identity
Blast2go	Glutathione metabolism	00480		89%
Blast2go	Metabolic pathways	01100		89%
Blast2go	Peroxidase.	EC:1.11.1.7	-	89%

Source	KEGGs	Term	Identity
Blast2go	Phenylalanine metabolism	00360	89%
Blast2go	Methane metabolism	00680	89%
Blast2go	Phenylpropanoid biosynthesis	00940	89%
Blast2go	Biosynthesis of phenylpropanoids	01061	89%
Blast2go	Metabolic pathways	01100	89%
Blast2go	Biosynthesis of secondary metabolites	01110	89%

Source	GOs	Term	Type	Identity
Blast2go	cell redox homeostasis	GO:0045454	Biological Process	89%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	89%
Blast2go	response to oxidative stress	GO:0006979	Biological Process	89%
Blast2go	heme binding	GO:0020037	Molecular Function	89%
Blast2go	peroxiredoxin activity	GO:0051920	Molecular Function	89%
Blast2go	peroxidase activity	GO:0004601	Molecular Function	89%

Source	InterPros	Term	Type	Identity
Blast2go	Thioredoxin fold	IPR012335	-	89%
Blast2go	Thioredoxin-like fold	IPR012336	-	89%
Blast2go	Redoxin	IPR013740	-	89%
Blast2go	Thioredoxin-like	IPR017936	-	89%

Full-Lengther Next Prediction

SNPs (tot: 37)

Position	A %	C %	G %	T %	Probability
28		33	66		0.997452
30			33	66	1.0
450		10		90	0.90298
479		10		90	0.90298
483	90		10		0.90298
486		11	88		0.923564
487	88	11			0.923564
488	88			11	0.923564
489	88			11	0.923564
496			88	11	0.923564
497		11	88		0.923564
499	88	11			0.923564
501		11		88	0.923564
511	12	87			0.992554
513			12	87	0.992554
564	33		66		0.997452
888		52		47	1.0
889	47		52		1.0
918		50		50	1.0
931			54	45	1.0
933	3		90	6	0.997073
937	7			92	0.999602
938	7		92		0.999664
940		33	66		1.0
982		9	54		1.0
984	33			16	1.0
986	83	16			0.994512
987		83	16		0.994512
989	16			83	0.994512
992	16			83	0.994512
993			16	83	0.994512
998			16	83	0.994512
1000		16		83	0.994512
1001	83	16			0.994512
1004	80		20		0.995493
1020			66	33	0.997452
1028		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain