SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15437

Length: 1775 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene15437

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Succinyl-CoA ligase [GDP-forming] subunit alpha-2, mitochondrial precursor, putative (EC:6.2.1.4); K01899 succinyl-CoA synthetase alpha subunit [EC:6.2.1.4 6.2.1.5]	-	-	83%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	83%
Blast2go	protein	-	-	93%

Source	ECs	Term	Type	e value	Identity
Blast2go	Succinate--CoA ligase (GDP-forming).	EC:6.2.1.4	-	0.0	93%

Source	KEGGs	Term	Type	Identity
Blast2go	Citrate cycle (TCA cycle)	00020		93%
Blast2go	Propanoate metabolism	00640		93%
Blast2go	Biosynthesis of phenylpropanoids	01061		93%
Blast2go	Biosynthesis of terpenoids and steroids	01062		93%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063		93%
Blast2go	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064		93%
Blast2go	Biosynthesis of alkaloids derived from histidine and purine	01065		93%
Blast2go	Biosynthesis of alkaloids derived from terpenoid and polyketide	01066		93%
Blast2go	Biosynthesis of plant hormones	01070		93%
Blast2go	Metabolic pathways	01100		93%
Blast2go	Biosynthesis of secondary metabolites	01110		93%
Blast2go	ATP citrate synthase.	EC:2.3.3.8	-	93%

Source	KEGGs	Term	Type	Identity
Blast2go	Citrate cycle (TCA cycle)	00020		93%
Blast2go	Carbon fixation pathways in prokaryotes	00720		93%
Blast2go	Biosynthesis of phenylpropanoids	01061		93%
Blast2go	Biosynthesis of terpenoids and steroids	01062		93%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063		93%
Blast2go	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064		93%
Blast2go	Biosynthesis of alkaloids derived from histidine and purine	01065		93%
Blast2go	Biosynthesis of alkaloids derived from terpenoid and polyketide	01066		93%
Blast2go	Biosynthesis of plant hormones	01070		93%
Blast2go	Metabolic pathways	01100		93%
Blast2go	Biosynthesis of secondary metabolites	01110		93%
Blast2go	Succinate--CoA ligase (ADP-forming).	EC:6.2.1.5	-	93%

Source	KEGGs	Term	Identity
Blast2go	Citrate cycle (TCA cycle)	00020	93%
Blast2go	Propanoate metabolism	00640	93%
Blast2go	C5-Branched dibasic acid metabolism	00660	93%
Blast2go	Carbon fixation pathways in prokaryotes	00720	93%
Blast2go	Biosynthesis of phenylpropanoids	01061	93%
Blast2go	Biosynthesis of terpenoids and steroids	01062	93%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063	93%
Blast2go	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	93%
Blast2go	Biosynthesis of alkaloids derived from histidine and purine	01065	93%
Blast2go	Biosynthesis of alkaloids derived from terpenoid and polyketide	01066	93%
Blast2go	Biosynthesis of plant hormones	01070	93%
Blast2go	Metabolic pathways	01100	93%
Blast2go	Biosynthesis of secondary metabolites	01110	93%

Source	ECs	Term	Type	e value	Identity
AutoFact	Succinate--CoA ligase (GDP-forming).	EC:6.2.1.4	-	0.0	83%

Source	KEGGs	Term	Type	Identity
AutoFact	Citrate cycle (TCA cycle)	00020		83%
AutoFact	Propanoate metabolism	00640		83%
AutoFact	Biosynthesis of phenylpropanoids	01061		83%
AutoFact	Biosynthesis of terpenoids and steroids	01062		83%
AutoFact	Biosynthesis of alkaloids derived from shikimate pathway	01063		83%
AutoFact	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064		83%
AutoFact	Biosynthesis of alkaloids derived from histidine and purine	01065		83%
AutoFact	Biosynthesis of alkaloids derived from terpenoid and polyketide	01066		83%
AutoFact	Biosynthesis of plant hormones	01070		83%
AutoFact	Metabolic pathways	01100		83%
AutoFact	Biosynthesis of secondary metabolites	01110		83%
AutoFact	Succinate--CoA ligase (ADP-forming).	EC:6.2.1.5	-	83%

Source	KEGGs	Term	Identity
AutoFact	Citrate cycle (TCA cycle)	00020	83%
AutoFact	Propanoate metabolism	00640	83%
AutoFact	C5-Branched dibasic acid metabolism	00660	83%
AutoFact	Carbon fixation pathways in prokaryotes	00720	83%
AutoFact	Biosynthesis of phenylpropanoids	01061	83%
AutoFact	Biosynthesis of terpenoids and steroids	01062	83%
AutoFact	Biosynthesis of alkaloids derived from shikimate pathway	01063	83%
AutoFact	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	83%
AutoFact	Biosynthesis of alkaloids derived from histidine and purine	01065	83%
AutoFact	Biosynthesis of alkaloids derived from terpenoid and polyketide	01066	83%
AutoFact	Biosynthesis of plant hormones	01070	83%
AutoFact	Metabolic pathways	01100	83%
AutoFact	Biosynthesis of secondary metabolites	01110	83%

Source	GOs	Term	Type	Identity
Blast2go	tricarboxylic acid cycle	GO:0006099	Biological Process	93%
Blast2go	succinate-CoA ligase (GDP-forming) activity	GO:0004776	Molecular Function	93%
Blast2go	binding	GO:0005488	Molecular Function	93%
Blast2go	ATP citrate synthase activity	GO:0003878	Molecular Function	93%
Blast2go	succinate-CoA ligase (ADP-forming) activity	GO:0004775	Molecular Function	93%
Blast2go	mitochondrion	GO:0005739	Cellular Component	93%

Source	InterPros	Term	Type	Identity
Blast2go	CoA-binding	IPR003781	-	93%
Blast2go	Succinyl-CoA ligase, alpha subunit	IPR005810	-	93%
Blast2go	ATP-citrate lyase/succinyl-CoA ligase	IPR005811	-	93%
Blast2go	NAD(P)-binding domain	IPR016040	-	93%
Blast2go	Succinyl-CoA synthetase-like	IPR016102	-	93%
Blast2go	ATP-citrate lyase/succinyl-CoA ligase, active site	IPR017440	-	93%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: D7TEX3

Fln msg:

Fln protein: MGQVRNTMALVSRIARRGLGPSNIRYFASSTVPPVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASVIYVPPPFAAAAILEAMNAELDLVVCITEGIPQHDMVRVKAALNKQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCLKRFVEDPQTEGIVLIGEIGGTAEEDAAAFIKESGTQKPIVSFIAGLTAPPGRRMGHAGAIISGGKGTAQDKIQILREAGVTVVESPAKIGTSILEVFKQRGLV*

Protein Length: 330

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATGTATATATCCCTTTCCCATATTTCAACATGGGCTCACGCATTGAAACTCCTCCGTCTGCTTCCCCTGAGTCAATATGGAGTCAATGGCGGCCTAGGGAAAGGTCCTACCCTTAATCGGAGGACTGTCATTACCTGCTCTTTCCCCAATGGAGTGAACGTTTGTCCTAAATACTCTTGAAACCTCGGTTGCTGCATGGAATGCTAAAGCAAATCAATCACTGGTCTGAATATTTTGTCTGCGGGGGCTGGTTTTTACCTACGGAGAGGAAGCGGAAGGCTAGAAGAATATC_-_ATGGGGCAGGTGAGGAATACGATGGCTTTGGTGTCCAGAATAGCCAGGCGCGGCCTCGGCCCCTCAAATATTAGATATTTCGCTAGCTCCACAGTCCCGCCGGTGTTCGTTGACAAGAATACCCGAGTCATTTGCCAGGGCATCACTGGCAAAAATGGCACATTTCACACAGAACAAGCCATCGAATATGGCACTAAAATGGTTGGAGGGGTTACACCCAAAAAAGGGGGAACAGAACACTTGGGCCTTCCAGTTTTTAATACGGTTGCAGAAGCAAAGGCTGAAACAAAGGCAAATGCATCAGTCATTTATGTACCACCACCATTTGCTGCTGCAGCTATTTTGGAAGCAATGAATGCTGAGCTGGACTTGGTTGTCTGCATTACTGAGGGCATTCCCCAGCATGATATGGTACGTGTAAAGGCAGCTTTAAACAAGCAATCTAAGACTCGACTTATTGGGCCAAATTGTCCTGGAATTATTAAGCCCGGCGAGTGCAAAATTGGTATCATGCCTGGCTATATCCACAAGCCTGGTCGTGTTGGGATTGTATCGAGATCTGGCACTCTTACGTATGAAGCGGTCTTTCAAACAACTGCTGTTGGTCTTGGACAATCAACATGTGTGGGAATTGGGGGTGATCCTTTCAATGGGACAAATTTTGTAGATTGCTTGAAGCGCTTTGTGGAAGATCCTCAGACTGAAGGCATCGTTCTGATAGGAGAAATTGGAGGAACCGCAGAGGAGGATGCTGCTGCATTTATTAAGGAGAGTGGAACACAAAAGCCTATTGTTTCATTCATTGCTGGACTTACAGCACCGCCTGGTCGTCGCATGGGTCATGCCGGAGCAATTATATCTGGAGGAAAGGGTACAGCCCAAGACAAAATTCAGATCTTACGAGAAGCAGGAGTCACAGTTGTTGAATCTCCAGCAAAAATCGGCACAAGTATTTTAGAAGTGTTCAAGCAGCGCGGTTTAGTTTGA___TAATAGACAGGCTCCATAACAGTCCATTTTGGTAGTCAACTCCATTCAAAATTTGAATTGATGATTGTGATTTTGACATCTCTTCTCTTCAAAGAACTTACCGTTTACTGTTTGAATTGCTTCTGTTAATAATTAAGGCTGATTATTTTAATGCTTCAGTGAGAGATCGATCAAGCAATAAGAGAACAAACTTGGAGAGCAATAACTTTGGTTCTTTATATTATTGGAAAATTTACCTGGGTGACTTTACCACCCAGAAGTGTGTGTCTGGTGCAAAGAATATTCTCATTACCATTGCGTCCCTAAAAGAGATGGGAAGATTATTTCTGCACTATTTTGCATCCATTACATTGTTCAGTACGATGAGAGGTGGTCATTTTTCTACTTGGCTGGCCTTTTATCCATTGGAATATTTAAAAGTAGAGTATTTTATTGGAAATCATTTGTTTCACTTCCTGTTAAGTTCCAAAAA

Fln Alignment:

sp_v1.1_unigene15437___IMGQVRNTMALVSRIARRGLGPSNIRYFASSTVPPVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXXDLVVCITEGIPQHDMVRVKAALNKQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCLKRFVEDPQTEGIVLIGEIGGTAEEDAAAFIKESGTQKPIVSFIAGLTAPPGRRMGHAGAIISGGKGTAQDKIQILREAGVTVVESPAKIGTSILEVFKQRGLV
D7TEX3_______________MVGQVRRLIPYVVSRIKSPLAPPS-RHLGTTAPPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGMEHLGLPIFNTVAEAKAETRANASVIYVPPPFAAAAIMEAVEAELDLVVCITEGIPQHDMVKVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVKKFLADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLRDVGATVVESPAKIGVAMLDVFKQRGLV

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
496		75	25		0.996473
498		25		75	0.996473
500			75	25	0.996473
501	75			25	0.996473
502	75		25		0.996473
503			25	75	0.996473
504	75	25			0.996473
507			75	25	0.996473
588	88		11		0.923564
1359	97	2			0.941605
1360	97			2	0.941605
1361			2	97	0.941605
1363		2	97		0.941605
1366	2		97		0.941605
1505	90		9		1.0
1686		10		90	0.999898
1753		25		25	0.995533
1754		75		25	0.996473
1756	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain