SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15426

Length: 1585 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene15426

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Putative steroid membrane binding protein n=1 Tax=Triticum aestivum RepID=A0MAU9_WHEAT	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Blast2go	membrane steroid-binding protein 1	-	-	79%

Source	GOs	Term	Type	Identity
Blast2go	negative regulation of cell growth	GO:0030308	Biological Process	79%
Blast2go	electron transport chain	GO:0022900	Biological Process	79%
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	79%
Blast2go	heme binding	GO:0020037	Molecular Function	79%
Blast2go	steroid binding	GO:0005496	Molecular Function	79%
Blast2go	plasma membrane	GO:0005886	Cellular Component	79%
Blast2go	nucleus	GO:0005634	Cellular Component	79%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	79%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	79%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Cytochrome b5	IPR001199	-	0.0	79%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PQF8

Fln msg:

Fln protein: MGLWGALMEAIPAYTGLSPVTFFTLVAVLVGVYNLVSGLFAAPPQHTSRESMVMEPLPPPVQLGEVTEEELKAYDGSDPKKPLLMAIKGQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEEKDLTGDTEGLGPFELDALQDWEYKFMGKYVKVGQIKKSAPKEEVVEGASNDGPEAESSLTEHNAKEVAEQAEAAVEPKENGVDSIADDADMEDVSDSKITRELEIDEPLEDSVEAKKAKDVLHEANHTTEVAQE*

Protein Length: 262

Fln nts: ATGGGGTGCCTTGTCTTATTGCCAAGTTCTAGTTATTGATATGAGCATAGGGCGTTTATTTAGCAATTTGGTTTTCATTTATGCCGTGTAAAACCATCAGAAGCTGTTACATAGTTGTTGGCTTTGTGTTGAATCAGACCAAAACCTAATCCCCTATCGAATACTGCAAGCAATTCTGAATCACCCCTTCTTGGATCTTGGGCAAA_-_ATGGGTCTATGGGGAGCCTTGATGGAAGCTATTCCTGCATATACAGGCCTCTCCCCAGTGACATTCTTCACACTTGTGGCTGTGTTAGTCGGTGTTTACAACCTTGTAAGCGGCCTGTTTGCGGCTCCTCCACAGCATACTAGCAGGGAATCCATGGTCATGGAACCTCTCCCCCCTCCAGTTCAGTTGGGTGAAGTCACAGAAGAGGAGTTGAAGGCCTATGATGGCTCAGATCCAAAGAAGCCCTTGCTGATGGCCATCAAGGGCCAGATCTATGATGTGTCCCAATCCAGAATGTTTTATGGTCCAGGTGGTCCATATGCCTTGTTTGCTGGGAAAGATGCTAGCCGAGCCTTGGCAAAGATGTCTTTTGAAGAAAAGGATTTAACCGGCGATACTGAAGGTCTTGGTCCATTTGAATTAGATGCACTGCAAGATTGGGAGTACAAATTTATGGGAAAATATGTCAAGGTTGGTCAGATTAAGAAAAGTGCCCCCAAAGAAGAAGTCGTTGAAGGTGCATCTAACGATGGACCTGAAGCGGAGAGCAGTTTGACTGAACATAATGCAAAAGAGGTTGCTGAGCAAGCTGAAGCTGCTGTAGAGCCTAAGGAAAATGGGGTTGACTCAATAGCTGATGATGCTGATATGGAGGACGTCTCTGATTCTAAAATTACAAGGGAATTGGAAATCGATGAGCCTTTGGAAGATTCAGTAGAGGCGAAGAAGGCTAAGGATGTTCTTCACGAAGCCAACCATACAACAGAAGTTGCTCAGGAGTAA___TGGAGTTGCACTTCACACAATAAACCACATATGCAACTATGTCAAATATTTTTGGATTCAATGCTAGCTAGTTAGTATCTTGACAACAGTTGGATTCCGATCTTTCATAGAGATACATACTTTACTAGTAGCAATTTTCCTCATTATAAGTCACTTTGAAAGGAACCGAAACTTAAGTAGATAGGCAATAGCCATATAGTTTATGTTTCAGGAATGCAGCTTTGTTTAGCAATTCCAGCTATAATAAGGCAGAGACAGATAAATCGTTAATGTGAATTAGACACCTTCCATGCAAAGTTCTCTATGTATATTCCTACCAGACAATATGAATCCGATGTTTATGCTATGTTGTTACCTGTGGCTCCTAAGCTTTAAATTAAATATTGAGTTGTATGTTATTATGATGCTTTGCTTGCTCTAATTTTGAGCTGATGAACAGCGTATTCTCCAATATAACGTTTTTCATTTTCTGTCATTGTGCAAATTATTGCATATAAAACTAATATGCTCATTTTTCATGGGTGTCTCAGACTGTCCCTTGAGTTAAAATGTATCCTCATGTATAAGCTTATTGATTTCTAGATTTTGTGTTAAGG

Fln Alignment:

sp_v1.1_unigene15426___MGLWGALMEAIPAYTGLSPVTFFTLVAVLVGVYNLVSGLFAAPPQHTSRESMVMEPLPPPVQLGEVTEEELKAYDGSDPKKPLLMAIKGQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEEKDLTGDTEGLGPFELDALQDWEYKFMGKYVKVGQIKKSAPKEEVVEGASNDGPEAESSLTEHNXXXXXXXXXXXXXXXXNGVDSIADDADMEDVSDSKITREL--EIDEPLEDSVEAKKAKDVLHEANHTTEVAQE
C0PQF8_______________MGLWGALMEAIPAYTGLTPVTFFTLVAVLVGVYNLVSGMFAGPPQHVSREAVAMEPLPPPVQLGEVTEEELKAYDGSDPKKPLLMAIKGQIYDVTQSRMFYGPGGPYALFAGKDASRALAKMSFEEKDLTGDIEGLGPFELDALQDWEYKFMGKYVKVGQIKKTAPKEEVTGGTSNDGPEAENSLTEENATEGAEQAEAAVEPKENGVETTVDDAELEDGSDSKISREYPEEINESLEDALEVKKAKDVLHEANHTAEVAQE

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
727		4	95		0.995881
804		85		14	0.993533
981		3		96	0.991825
990	94		5		1.0
993	5		94		1.0
994	94	5			1.0
995		5	94		1.0
1000	94		5		1.0
1039		1		86	1.0
1304		88		11	1.0
1333	6		92	1	1.0
1335	1	4		94	0.999862
1369	87			4	0.999414

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain