SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15421

Length: 2613 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene15421
TCGTTTCAATGAGTGCGTGCTCGACGGAGGCGTCGCTTTCGAGAGGGCTAACGGGGCCGACATCTGGGCTTACGCCTCCGCTCATCCAGACTTCAACCATCTCTTTAACAACGCCATGGCCTGCAACGCCAGAATCGTCATGAAAGCGCTTCTGTCCAAATACCGTGGCTTTGACGGCTTGACTTCCTTGGTGGATATTGGGGGCGGAACTGGAACCGCCATTGCAGAGATTGTGAGAGCTTATCCTTCCATCAGAGGCATCAACTACGACCTCCCTCATGTCGTGGCCACTGCTCCCCATCTCCCAGGTGTGGAGCACATGGGCGGAGACATGTTTGAAACTGTGCCTTCTGCGGACGCCATATTCATGAAGTGGATCATGCATGACTGGGGCGACGAGGACTGTATCAAGATACTGAAGAGCTGTAGGAAAGCGATCCCGGAGACGGGGANGCTCATTATTGTTGACGTANTGGCGCTGGACTCTAATCACATCAGTGATAATAATAATGATAGTCAGAAAAAGAAGCCGGTTCTGGATCCTAATTTAGTTTTAGTATTTGATTTAGTAATGGTGGCGCACTGTTCTGGTGGGAAGGAAAGAACAGAAGAAGAATGGAAGAAGATTTTATCAGAAGGTGGATTTCATTGTTATAAAATAATCACCATTCCTGATTTCCAATCTGTAATTGAAGCATTTCCTTTTTGATTATCTGCTCTTTATCGGCATACCAAGTTTTGCACAGTGGCAGGGGAGTTCGACGGATGAAACAGAAGCATCGAAGCTTTTGAATTCCTCATGTGTTTGAATGATTTACTTCCTGCATGACTTTTTATTCATTCATATCCTTTCTGGCCTTCGCGCGGCTCCGAGAGAACTGAGCGGATTTGATGTCCCTGCAGATTGTGAATTGCCTTTAGGCTTTTCTTGCGATCGATTTGCTGTGATCGAAACATAAATGTTAGTTATCCATTTAATCATTTTAAATGATTGACGGAGCCCCTTCGCAGCTTGCATTGCATTATTGGCTCTTGGGGGATCTCAGCCGGAAGGTCTGACTAATATTAAGGAAAACAATGGATGCACTGAGAAAGCAGGCAAACAAGTTGAGAGAACAGGTTGCGAAACAGCAGCAGGCTGTTCTTAAACAATTTAGTGCGAGTGGATATGGAAATTCTGATACAATAGTTACAGATGAGGCAGAGTTTCAGCGGCACCAATTACTTGAGAAACTTTATATATCTACTCGAACAGGAAAGCATCTTCAAAGAGACATTGTGCGTGGAGTTGAAGGACTTATAGCTACTGGTTCTAAACAGATTGAAATAGGAACAAAGTTATCTGAAGATTGCCGTAAGTATGGGGCGGAAAATACTAGTTATAGTGGTGGGACTTTAGCAAAAGCTGCATCTGCTTATGGCACAGCCCGTGCTAACATTGATAAGGAACGGGACAACTTAAACAGAGCACTTGGTTCTCAGATAGCAGATCCTTTAAGAGCGATGATCACAGGAGTTCCTCTGGAAGATGCTCGCCATCTTGCTCAACGTTATGATCGAATGCGACAAGAAGCTGAACTACAGACAGCTGAAATTGCGAGACGACAAGCAAGGGTTAGAGAGGTTCCGGGCAACCCTGAAAATATAATGAAGTTGCAAGCAGCTGAAACCAAGATGCAAGAGCTCAAGGCCAACATGGCAGTTTTGGGAAAGGAAGCTGTAGCTGCAATGGCAGCTGTTGAAGCACAACAACAAAGGTTGACACTTCAGCGTCTTATAACTATGGTTGAAGCAGAAAGTGCACACCATCGAAGAATTGCACAAATCCTTGATGAGGTTCAAGCAGAGATGGTTTCAGAAAGACAGCGGATTGAATCTGCACCTCCTACAGTAGCTAATAATCACATGCCTCCATCTTATGAGTCCAGTGTGAATGGGGGTCGGACAATGCAGGCTTCATCTTTAGATAGATCTGTTGATAAAGCTATGTATTTCTTGGCAGAGGCAATGCATGCATTTGAAGCTGAGACAGAGGGGGAATTGAGTTTGGCAGTTGGTGATTATGTTGTTGTTCGACAGGTCAACTCTTCAGGTTGGTCTGAAGGTGAATGTAATGGAAAAGCAGGTTGGTTTCCTTCAGCCTATGTGGAGAGGCGTCAGCGGGTTCAAGCAAGCAAAGTTGCTGAAGTATTCTAATGGTTTCATCCTTTCAACTACCTGCCCCGGATTTGTACATTTTTGGTGTTTGTTAAGTGTATTGGAAGCTACTGATTGTTTGATTATCAATAGTTCCTGACTAACTATTCAGTTCATAAACAGCCATGTCAACCTGAAATCTGTGACGTGGCATTGTTTTAAAGGGATTTGTGAGTTTGTGTGAATGGTTTGGAAAAGAAAATCAGTTGTGTTTCATTACATTTAGATTTGTTTGGGGCATAAATATTGCAAACTTATAAATTTCTGGTAATAATTAGCTTATCATTGTTGATAATCCCAAGAACAGCTTAGGATAAGCATGATTCAAGAAGAAATATGTTGAAGAAAGAACTCGATTATATTTGCTTAGGAACAAAAATGAGAAAGTAAGTTTGAGAGCATTTTACGTGATGCAAA

Ace file of the UniGene sp_v1.1_unigene15421

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Methyltransf_2 multi-domain protein	-	-	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	70%
Blast2go	sh3 domain-containing protein 2	-	-	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	clathrin binding	GO:0030276	Molecular Function	0.0	78%
Blast2go	cytoplasm	GO:0005737	Cellular Component	0.0	78%

Source	InterPros	Term	Type	Identity
Blast2go	Neutrophil cytosol factor 2 p67phox	IPR000108	-	78%
Blast2go	Src homology-3 domain	IPR001452	-	78%
Blast2go	BAR domain	IPR004148	-	78%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LK51

Fln msg:

Fln protein: MDALRKQANKLREQVAKQQQAVLKQFSASGYGNSDTIVTDEAEFQRHQLLEKLYISTRTGKHLQRDIVRGVEGLIATGSKQIEIGTKLSEDCRKYGAENTSYSGGTLAKAASAYGTARANIDKERDNLNRALGSQIADPLRAMITGVPLEDARHLAQRYDRMRQEAELQTAEIARRQARVREVPGNPENIMKLQAAETKMQELKANMAVLGKEAVAAMAAVEAQQQRLTLQRLITMVEAESAHHRRIAQILDEVQAEMVSERQRIESAPPTVANNHMPPSYESSVNGGRTMQASSLDRSVDKAMYFLAEAMHAFEAETEGELSLAVGDYVVVRQVNSSGWSEGECNGKAGWFPSAYVERRQRVQASKVAEVF*

Protein Length: 374

Fln nts: TCGTTTCAATGAGTGCGTGCTCGACGGAGGCGTCGCTTTCGAGAGGGCTAACGGGGCCGACATCTGGGCTTACGCCTCCGCTCATCCAGACTTCAACCATCTCTTTAACAACGCCATGGCCTGCAACGCCAGAATCGTCATGAAAGCGCTTCTGTCCAAATACCGTGGCTTTGACGGCTTGACTTCCTTGGTGGATATTGGGGGCGGAACTGGAACCGCCATTGCAGAGATTGTGAGAGCTTATCCTTCCATCAGAGGCATCAACTACGACCTCCCTCATGTCGTGGCCACTGCTCCCCATCTCCCAGGTGTGGAGCACATGGGCGGAGACATGTTTGAAACTGTGCCTTCTGCGGACGCCATATTCATGAAGTGGATCATGCATGACTGGGGCGACGAGGACTGTATCAAGATACTGAAGAGCTGTAGGAAAGCGATCCCGGAGACGGGGAaGCTCATTATTGTTGACGTAcTGGCGCTGGACTCTAATCACATCAGTGATAATAATAATGATAGTCAGAAAAAGAAGCCGGTTCTGGATCCTAATTTAGTTTTAGTATTTGATTTAGTAATGGTGGCGCACTGTTCTGGTGGGAAGGAAAGAACAGAAGAAGAATGGAAGAAGATTTTATCAGAAGGTGGATTTCATTGTTATAAAATAATCACCATTCCTGATTTCCAATCTGTAATTGAAGCATTTCCTTTTTGATTATCTGCTCTTTATCGGCATACCAAGTTTTGCACAGTGGCAGGGGAGTTCGACGGATGAAACAGAAGCATCGAAGCTTTTGAATTCCTCATGTGTTTGAATGATTTACTTCCTGCATGACTTTTTATTCATTCATATCCTTTCTGGCCTTCGCGCGGCTCCGAGAGAACTGAGCGGATTTGATGTCCCTGCAGATTGTGAATTGCCTTTAGGCTTTTCTTGCGATCGATTTGCTGTGATCGAAACATAAATGTTAGTTATCCATTTAATCATTTTAAATGATTGACGGAGCCCCTTCGCAGCTTGCATTGCATTATTGGCTCTTGGGGGATCTCAGCCGGAAGGTCTGACTAATATTAAGGAAAACA_-_ATGGATGCACTGAGAAAGCAGGCAAACAAGTTGAGAGAACAGGTTGCGAAACAGCAGCAGGCTGTTCTTAAACAATTTAGTGCGAGTGGATATGGAAATTCTGATACAATAGTTACAGATGAGGCAGAGTTTCAGCGGCACCAATTACTTGAGAAACTTTATATATCTACTCGAACAGGAAAGCATCTTCAAAGAGACATTGTGCGTGGAGTTGAAGGACTTATAGCTACTGGTTCTAAACAGATTGAAATAGGAACAAAGTTATCTGAAGATTGCCGTAAGTATGGGGCGGAAAATACTAGTTATAGTGGTGGGACTTTAGCAAAAGCTGCATCTGCTTATGGCACAGCCCGTGCTAACATTGATAAGGAACGGGACAACTTAAACAGAGCACTTGGTTCTCAGATAGCAGATCCTTTAAGAGCGATGATCACAGGAGTTCCTCTGGAAGATGCTCGCCATCTTGCTCAACGTTATGATCGAATGCGACAAGAAGCTGAACTACAGACAGCTGAAATTGCGAGACGACAAGCAAGGGTTAGAGAGGTTCCGGGCAACCCTGAAAATATAATGAAGTTGCAAGCAGCTGAAACCAAGATGCAAGAGCTCAAGGCCAACATGGCAGTTTTGGGAAAGGAAGCTGTAGCTGCAATGGCAGCTGTTGAAGCACAACAACAAAGGTTGACACTTCAGCGTCTTATAACTATGGTTGAAGCAGAAAGTGCACACCATCGAAGAATTGCACAAATCCTTGATGAGGTTCAAGCAGAGATGGTTTCAGAAAGACAGCGGATTGAATCTGCACCTCCTACAGTAGCTAATAATCACATGCCTCCATCTTATGAGTCCAGTGTGAATGGGGGTCGGACAATGCAGGCTTCATCTTTAGATAGATCTGTTGATAAAGCTATGTATTTCTTGGCAGAGGCAATGCATGCATTTGAAGCTGAGACAGAGGGGGAATTGAGTTTGGCAGTTGGTGATTATGTTGTTGTTCGACAGGTCAACTCTTCAGGTTGGTCTGAAGGTGAATGTAATGGAAAAGCAGGTTGGTTTCCTTCAGCCTATGTGGAGAGGCGTCAGCGGGTTCAAGCAAGCAAAGTTGCTGAAGTATTCTAA___TGGTTTCATCCTTTCAACTACCTGCCCCGGATTTGTACATTTTTGGTGTTTGTTAAGTGTATTGGAAGCTACTGATTGTTTGATTATCAATAGTTCCTGACTAACTATTCAGTTCATAAACAGCCATGTCAACCTGAAATCTGTGACGTGGCATTGTTTTAAAGGGATTTGTGAGTTTGTGTGAATGGTTTGGAAAAGAAAATCAGTTGTGTTTCATTACATTTAGATTTGTTTGGGGCATAAATATTGCAAACTTATAAATTTCTGGTAATAATTAGCTTATCATTGTTGATAATCCCAAGAACAGCTTAGGATAAGCATGATTCAAGAAGAAATATGTTGAAGAAAGAACTCGATTATATTTGCTTAGGAACAAAAATGAGAAAGTAAGTTTGAGAGCATTTTACGTGATGCAAA

Fln Alignment:

sp_v1.1_unigene15421___MDALRKQANKLREXXXXXXXXXXXXFSASGYGNSDTIVTDEAEFQRHQLLEKLYISTRTGKHLQRDIVRGVEGLIATGSKQIEIGTKLSEDCRKYGAENTSYSGGTLAKAASAYGTARANIDKERDNLNRALGSQIADPLRAMITGVPLEDARHLAQRYDRMRQEAELQTAEIARRQARVREVPGNPENIMKLQAAETKMQELKANMAVLGKXXXXXXXXXXXXXXXXXXXXXITMVEAESAHHRRIAQILDEVQAEMVSERQRIESAPPTVANNHMPPS--YESSVNGGRTMQASSLDRSVDKAMYFLAEAMHAFEAETEGELSLAVGDYVVVRQVNSSGWSEGECNGKAGWFPSAYVERRQRVQASKV
B8LK51_______________MDTLRKQATKFREQVAKQQHAVFKQFGGSGYGSSDIVSTDEPEFKRHQKLEKLYISTRAGKHFQRDIVRGVEGLIVVGSKQLEIGTKLSEDCRKYGVENTCTSGETLAKAASYYGSARVRMEKERETLHRSLGTQIAEPLRAMVMGAPLEDARHLAQRYDRMRQEAEAQAAEVSRRQLKARETTGNLDNAMKLQAAETKLQELKTNMAVLGKEAAVAMAAVEAQQQRLTLQRLIAMVEAERTYHQRVMKVLDEVHGEMVSDRQRIESAHLAVADNPIPPPTYEESNATDIHASQHSSFYRSVENATLFLGEVIQAFQAETDVELSLAAGDYVVVRQVSPTGWAEGECKGKAGWFPSSFVERRERVLASKI

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
453	75			25	0.996473
473	75		25		0.996473
495		25		75	0.996473
543		80		20	0.995493
567	25			75	0.996473
569			75	25	0.996473
570		25		75	0.996473
1724			83	16	0.994512
1725		83	16		0.994512
1726			16	83	0.994512
1901	85		14		0.993533
1902	85		14		0.993533
1903			14	85	0.993533
1938			85	14	0.993533
1943	14	85			0.993533
2061	87		12		0.992554
2064	87			12	0.992554
2065	12			87	0.992554
2088		90	10		0.90298
2089			10	90	0.90298
2090			10	90	0.90298
2536	18		81		0.999994

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain