SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15387

Length: 1741 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene15387 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	WD-repeat protein, putative n=1 Tax=Ricinus communis RepID=B9T0U7_RICCO	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	at3g62770 f26k9_200	-	-	81%

Source	GOs	Term	Type	Identity
Blast2go	response to starvation	GO:0042594	Biological Process	81%
Blast2go	senescence	GO:0010149	Biological Process	81%
Blast2go	autophagy	GO:0006914	Biological Process	81%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	81%
Blast2go	protein binding	GO:0005515	Molecular Function	81%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LRE8

Fln msg:

Fln protein: MATATTVSPPSSTTSPMLDPYPDPNPNSPSSTETASEKSSLLYVSFNQDFGCFACGTEQGFQVYNCDPFRETFRRDFVTCGVGVVEMLFRCNILALVGGGSNPQYPPNKVMIWDDHQSRCIGELSFRSEVRAVKLRRDRIVVVLEHKIYVYNFVDLKLLHQIETMANPKGLCAVSHAPNSFVLACPGLHRGQMRVEHYGLKRTKFITAHDSRIACFALTLDGSLLATASTKGTLIRIFNTLDATRLQEVRRGADRAEIYSLAFSSSHQWLAVSSDKGTIHIFGLNVPRSGEDPRSVDATQSLTGTNNGSGGNLVIPSLGANPGSSLSFMRGVLPRYFSSQWSFAQFHLPEGLQFLVAFGHQKNTIVIVGLDGSFYRCAFDPVNGGEMVQKEYARFLKSDESSDN*

Protein Length: 406

Fln nts: ATGGGGGACCCGACGATAAAAGGAAAGAGAAAGCACGTAATTGTTATAATCGTAAAAGCGTACAAAGGAAGCGAAGCCGCCGAAGAGAACACAGAACCGGGGTTGGGCTTTGTCATGTTTCGATATGTGAATTTGTGAGGGTCTCTTGGGGTTCTTCCATTTTCAGGGTCGTCGTGACCTTGGCTGTCACTCATTGTTTCTTCTCTTTTGTATGGAAGGTGATTGCCCAATTCATTA_-_ATGGCGACGGCAACGACTGTTTCACCGCCAAGCAGTACTACTTCCCCTATGCTTGACCCATATCCCGATCCAAATCCCAATTCGCCGTCTTCAACAGAGACTGCCAGTGAAAAATCCTCATTGCTCTACGTATCATTCAACCAGGACTTCGGTTGCTTTGCCTGTGGCACTGAGCAAGGTTTCCAGGTCTATAACTGCGATCCGTTCAGAGAAACCTTTAGAAGAGACTTCGTGACTTGTGGTGTTGGTGTTGTGGAGATGTTATTCCGATGTAATATTTTGGCCCTCGTGGGCGGGGGTTCGAATCCCCAGTACCCTCCCAATAAGGTCATGATCTGGGATGATCATCAGAGCCGCTGTATTGGGGAATTGTCGTTCAGGTCTGAGGTTCGAGCCGTGAAGCTGAGACGGGATCGGATTGTGGTGGTGTTGGAGCACAAGATTTATGTGTACAATTTCGTGGATTTGAAGCTATTGCATCAGATTGAGACGATGGCAAACCCTAAGGGCTTGTGTGCTGTTTCTCATGCTCCCAATAGCTTCGTGTTGGCCTGCCCAGGCTTGCACCGTGGGCAGATGAGAGTCGAGCACTATGGCCTCAAGAGGACCAAATTTATAACTGCCCATGATTCTCGCATCGCCTGCTTTGCGCTCACCCTCGATGGCAGCCTCCTTGCTACTGCTAGTACAAAGGGGACCCTTATAAGGATCTTCAACACCCTAGACGCCACTCGATTGCAAGAGGTTCGTAGAGGTGCTGATAGAGCAGAAATCTATAGTCTGGCCTTCTCTTCCAGTCATCAATGGCTGGCAGTTTCAAGCGACAAGGGAACAATTCACATTTTTGGCCTCAATGTACCAAGGTCAGGAGAAGATCCAAGGAGTGTTGATGCCACACAAAGTCTCACAGGGACAAATAATGGTTCTGGTGGTAATCTGGTCATTCCCTCACTGGGAGCTAATCCTGGCTCGTCACTTTCTTTTATGAGAGGAGTCCTGCCAAGATATTTTAGCTCTCAGTGGTCCTTCGCTCAGTTTCACTTGCCTGAGGGATTGCAATTTCTTGTAGCTTTTGGTCATCAAAAGAACACTATTGTCATTGTTGGCCTAGATGGAAGCTTCTATAGATGTGCGTTTGATCCTGTAAACGGTGGTGAAATGGTGCAAAAGGAGTATGCTAGATTTCTGAAATCAGATGAATCTAGTGACAACTGA___TGTTTGTTTATTTAATCCTGTAAGTGGTGGTGAAATGTTGCAAAATAACTATGTGAGATTTTCTGATATCAGATGTATCTAGTGACAACTGATGTTTGTTTGTTGGGGATTTTCAGCTGCATTTAATTGGATTTTAGTTGTAATGAAAGTCTCTTCTTGAACTGAATATAATGTAATGTAAATACTGTATTGTTCCGGTAGTATTGTACAGTATCATTGTAACAGAAATGTTCTCAATAAAAGATTCTAATTTCTTTGGTATCTCTTGCCAAGGTATTTATGCCGAGAA

Fln Alignment:

sp_v1.1_unigene15387___ETASEKSSLLYVSFNQDFGCFACGTEQGFQVYNCDPFRETFRRDFVTCGVGVVEMLFRCNILALVGGGSNPQYPPNKVMIWDDHQSRCIGELSFRSEVRAVKLRRDRIVVVLEHKIYVYNFVDLKLLHQIETMANPKGLCAVSHAPNSFVLACPGLHRGQMRVEHYGLKRTKFITAHDSRIACFALTLDGSLLATASTKGTLIRIFNTLDATRLQEVRRGADRAEIYSLAFSSSHQWLAVSSDKGTIHIFGLNVPRSGEDPRSVDATQXXXXXXXXXXXXLVIPSLGANPGSSLSFMRGVLPRYFSSQWSFAQFHLPEGLQFLVAFGHQKNTIVIVGLDGSFYRCAFDPVNGGEMVQKEYARFLKSDESSDN
B8LRE8_______________ETANEKSSLLYVSFNQDFGCFACGTEQGFQVYNCDPFRETFRRDFNNGGIGVVEMLFRCNILALVGGGSNPQYPPNKVMIWDDHQSRCIGELSFRSEVRAVKLRRDRIVVVLEHKIYVYNFVDLKLLHQIETMANPKGLCCVSHAPNSFVLACPGLHRGQMRVEHYGLKRTKFITAHDSRIACFALTLDGSLLATSSTKGTLIRIFNTLDATRLQEVRRGADRAEIYSLAFSSNHQWLAVSSDKGTIHIFGLNVPRTGEDSRSVDATQ-SLPGTNGSGGNLVIPSPGGNPGSSLSFMRGVLPRYFSSQWSFAQFHLPEGLQFLVAFGHQKNTIVIVGLDGSFYRCAFDPVNGGEMEQKEYARFLKSDESSDS

SNPs (tot: 67)

Position	A %	C %	G %	T %	Probability
405	96		3		0.990463
407		3		96	0.990463
411	94		1		0.95615
413			3	94	0.95615
414	94	3		1	0.95615
416	5	3	1	88	0.999863
417	1	3	94		0.95615
418	5	1	3	86	0.999646
419	1	1	7	88	1.0
420	3	94	1		0.964041
421	1	5		84	1.0
422	7	1	1	84	1.0
423	9		5	84	1.0
424		9	3	86	1.0
425		5	94		0.999997
427	3	11		84	1.0
431		90	10		1.0
433	95	4			0.995881
434	95		4		0.995881
437		95	4		0.996252
442	95		4		0.995881
443		4	95		0.995881
444	93	4			0.976545
447			6	93	0.999998
448	6		4	89	0.999983
449			95	4	0.995482
450		93		6	0.999998
451	93		6		0.999998
452	93	6			0.999998
453		6	4	89	0.999983
454	10	89			1.0
455		93	6		0.999998
456		95	4		0.995482
457		6		93	0.999999
458	6	93			0.999999
464	93	6			0.999999
466		6		93	0.999999
476		92		7	0.999999
479	92	7			0.999999
480	7		92		0.999999
482	92	7			0.999999
484	7	90	2		0.999998
486		87	10		1.0
488		7	92		0.999999
495	92		5		0.992495
496	94	5			0.9982
500	92		7		1.0
503	5			94	0.998397
541	5		94		0.998894
543	88	2	2		0.988099
545	2	8		88	1.0
549		3	9	87	1.0
551	3	87		6	0.990219
552	3	87	9		1.0
554	6		93		0.99903
558	9		90		1.0
560		9	90		1.0
563			9	90	1.0
565	90			9	1.0
567	9	87	3		1.0
568	87	9		3	1.0
571		12		87	1.0
572	3		9	87	1.0
584		88	4		0.999262
587			12	88	1.0
589	4			87	0.999414
590			12	87	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain