SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15386

Length: 2554 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene15386
CGTCGTGACCTTGGCTGTCACTCAATTCGTCCAATTGAATGAAATTGTTGAATTCAACTCACGATACAACTGGTTGTTAGCCATCCCTCTTCCCATTCTCGTTTGTCTGTTTTGTTTTGTTTTGTTTTCCCTCTCAGACAGTCGCCATAGTTCTTGCTACTCAGAGATTCCAGCCTGTTTGGCTTCCCTCAGACAGACATACGGTCGTTTTTGTATCTAATTCTTCGTTGAATTGACCATCCGCTCTGAACCATCGACGTCGCTGCAAAATCCCGAATAATTCTTCGTGTAATCGCTCCATATTCGGCTCTCTGCATGACACAATCTATCTGGTCTGTGCCTACAGCAAAGCTTTAGCTGACAATCCAAGCCCTTGTGGTTGATTTGAGTCCCATTTTAGCCCATCTTAGAGATGTTCAGGAGAGCAAAACTTGATGGGTTGCATTGACAACAGCAAAGTTCAGAAGACATTGAAGAAGTGGTTTTTCATAGATAAAAGGGTTGGGTGAATACCTGTGCTTCTGAATTCACTCGGTGAAGATTATACATCTGAGTCAAGGATACTTGCTCAGTTTACAAGTTCTTTACAGGGAAGACTTCATTGACTTAAGATAAATCCTTTTCATAGTCATTTTGGTGGTATGGCATACGGATTAGAGCAAAATGCTGTTCTTACTGATCCTCCCCGGCAGTAGTCCCAAATTTACCCTTGCCTACAAATTCATCATCATCACTGTATTCTCCAAGTTCAACTTCTGGTAGCTCAGTACCTACAGCTCAACGAAAGATGCTTTCAAGATCTATTAGTGCTGTTCTTACTGATTCTTCTACAATAGTTCCAAATTCATCCGTGTTTACATATTCATCAATAACACCATATTCTCCAAGTTCAACATCTGGTAGCTCAACACCAACAGCTCAAAAAAAGGTGCTTTCAAGATCAATCAGTGCTGTTCTTACTGATTCTTCCACGGTTGTTCTTACTGATCCTCCCATGCCAGTTCCAGTTCCACCCTTGCTTTCATTTTCATTATCATCAAGGTATTCTCCAAGGTCAGCATCTGGTAGCCCAGTATCTAGAGCTCAAAGAATGGTTCTTCCAAACAGGATCGATGTTGAGAATCGTGTTAGCCTTATCAATGCAATGAGAGCCTCATCTCCTACTCATGCCCGTCAGGAAGCAGCCTATCGTGCCTGGACTGGTAAGCATCCTTCAGCATTGACCATGTTTGAGATGATGATGGATGCATCAAAAGGCAAGCAAATTGTAGTGTTCTTGGATTATGATGGCACTCTTTCACCTATTGTAAATGATCCTGATCGTGCTTACATGTCGAAACAGATGCGTGCAACGGTTAGAAAAGTAGCAAGATATTTTCCTACTGCTATCATTACTGGAAGGTGCACAGCTAAGGTGTATGAGTTTGTAAAGTTAGCCGAACTGTATTATGCTGGTAGCCATGGCATGGACATTATGGGACCAGCCAAAAGTTCAAAGGGCTCTAAGGCGAACTGTTCTAGGACAACAGACAAAAAAGGTGGTGTTGTTCTCTACCAGCCTGCCAGTGAGTTCTTACCAATGATAGACAAGGTTTTTGCATTGCTGGTTGAAAAGACAAAGAAAATCAGTGGAGCCATAGTTGAAAATCACAAATTTTGTGCTTCTGTGCATTATCGACGTGTTGAAGAGAAGAGTTGGGCTGCACTTGCAGAGCAAGTAGCAAGTGTAGTTAAAGAGTATCCTCAATTGCGACTGACACAAGGAAGGAAGGTCTTAGAGATTCGTCCTATAATTAAATGGGACAAAGGAAAAGCCCTTGAATATTTATTAGTGTCACTTGGATTGGCAAATCGGAATGATGTACTACCATTGTATATAGGAGATGATCGTTCAGATGAAGATGCATTTAAGGTACTGCGGGACAGAGGTCAAGGTTATGGGATTCTTGTGTCCACTGCCCCCCAAGAAACAAATGCAGCATATTCACTTAAAGAACCGTCTGAGGTTATGAATTTTTTGAATCGCCTCGTGAATTGGAAGCGGGATTCCAAAAAGCGTCCATTGTCTAAAGTGTAAATGGGCATTCGGGATTTGGTATATGGTGATGCCCAGGTTTTGGAATTTGACAATGTGCATAGCAACGCCAGTAATGAAGGGTGGTTTTAAATCCTTTTGACTGATCACCATATCTATATGTAATACACCATCATTTTGTATTTCAAGGAAAAGTTTTTGAGATATCTGCCTAGTTGTCTTTGTAATTGAGCAATGCTCAAGTTGCATGGACATGATAAGTTACGGTGATTTTTATGTCACTGGTTTGTATTCTGTGATAGGAAAGTCATAAATGTTAAGAAAAAGGGGAAAAATGAAAAAAAAATTGGCATCCCCATTTGCTATAGCAATGGCAATGGTTATGCTTACTTTTGTCTTGGAAATATTCAATATTTTGAAGTAATCTTAACAAAGATTGCTTTAACAATGAACATTCTTCCAGAACCTCAATGCATTTATTATCATGGTTCACTGTACACAATAAAGCGAATTTCAATT

Ace file of the UniGene sp_v1.1_unigene15386

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	trehalose-6-phosphate synthase, putative (EC:3.1.3.12)	-	-	66%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	68%
Blast2go	protein	-	-	77%

Source	ECs	Term	Type	e value	Identity
Blast2go	Trehalose-phosphatase.	EC:3.1.3.12	-	0.0	77%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Starch and sucrose metabolism	00500		0.0	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	trehalose biosynthetic process	GO:0005992	Biological Process	0.0	77%
Blast2go	trehalose-phosphatase activity	GO:0004805	Molecular Function	0.0	77%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B9HFI0

Fln msg: your sequence is longer than subject: 430 - 374

Fln protein: MLSRSISAVLTDSSTIVPNSSVFTYSSITPYSPSSTSGSSTPTAQKKVLSRSISAVLTDSSTVVLTDPPMPVPVPPLLSFSLSSRYSPRSASGSPVSRAQRMVLPNRIDVENRVSLINAMRASSPTHARQEAAYRAWTGKHPSALTMFEMMMDASKGKQIVVFLDYDGTLSPIVNDPDRAYMSKQMRATVRKVARYFPTAIITGRCTAKVYEFVKLAELYYAGSHGMDIMGPAKSSKGSKANCSRTTDKKGGVVLYQPASEFLPMIDKVFALLVEKTKKISGAIVENHKFCASVHYRRVEEKSWAALAEQVASVVKEYPQLRLTQGRKVLEIRPIIKWDKGKALEYLLVSLGLANRNDVLPLYIGDDRSDEDAFKVLRDRGQGYGILVSTAPQETNAAYSLKEPSEVMNFLNRLVNWKRDSKKRPLSKV*

Protein Length: 431

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTCGTCCAATTGAATGAAATTGTTGAATTCAACTCACGATACAACTGGTTGTTAGCCATCCCTCTTCCCATTCTCGTTTGTCTGTTTTGTTTTGTTTTGTTTTCCCTCTCAGACAGTCGCCATAGTTCTTGCTACTCAGAGATTCCAGCCTGTTTGGCTTCCCTCAGACAGACATACGGTCGTTTTTGTATCTAATTCTTCGTTGAATTGACCATCCGCTCTGAACCATCGACGTCGCTGCAAAATCCCGAATAATTCTTCGTGTAATCGCTCCATATTCGGCTCTCTGCATGACACAATCTATCTGGTCTGTGCCTACAGCAAAGCTTTAGCTGACAATCCAAGCCCTTGTGGTTGATTTGAGTCCCATTTTAGCCCATCTTAGAGATGTTCAGGAGAGCAAAACTTGATGGGTTGCATTGACAACAGCAAAGTTCAGAAGACATTGAAGAAGTGGTTTTTCATAGATAAAAGGGTTGGGTGAATACCTGTGCTTCTGAATTCACTCGGTGAAGATTATACATCTGAGTCAAGGATACTTGCTCAGTTTACAAGTTCTTTACAGGGAAGACTTCATTGACTTAAGATAAATCCTTTTCATAGTCATTTTGGTGGTATGGCATACGGATTAGAGCAAAATGCTGTTCTTACTGATCCTCCCCGGCAGTAGTCCCAAATTTACCCTTGCCTACAAATTCATCATCATCACTGTATTCTCCAAGTTCAACTTCTGGTAGCTCAGTACCTACAGCTCAACGAAAG_-_ATGCTTTCAAGATCTATTAGTGCTGTTCTTACTGATTCTTCTACAATAGTTCCAAATTCATCCGTGTTTACATATTCATCAATAACACCATATTCTCCAAGTTCAACATCTGGTAGCTCAACACCAACAGCTCAAAAAAAGGTGCTTTCAAGATCAATCAGTGCTGTTCTTACTGATTCTTCCACGGTTGTTCTTACTGATCCTCCCATGCCAGTTCCAGTTCCACCCTTGCTTTCATTTTCATTATCATCAAGGTATTCTCCAAGGTCAGCATCTGGTAGCCCAGTATCTAGAGCTCAAAGAATGGTTCTTCCAAACAGGATCGATGTTGAGAATCGTGTTAGCCTTATCAATGCAATGAGAGCCTCATCTCCTACTCATGCCCGTCAGGAAGCAGCCTATCGTGCCTGGACTGGTAAGCATCCTTCAGCATTGACCATGTTTGAGATGATGATGGATGCATCAAAAGGCAAGCAAATTGTAGTGTTCTTGGATTATGATGGCACTCTTTCACCTATTGTAAATGATCCTGATCGTGCTTACATGTCGAAACAGATGCGTGCAACGGTTAGAAAAGTAGCAAGATATTTTCCTACTGCTATCATTACTGGAAGGTGCACAGCTAAGGTGTATGAGTTTGTAAAGTTAGCCGAACTGTATTATGCTGGTAGCCATGGCATGGACATTATGGGACCAGCCAAAAGTTCAAAGGGCTCTAAGGCGAACTGTTCTAGGACAACAGACAAAAAAGGTGGTGTTGTTCTCTACCAGCCTGCCAGTGAGTTCTTACCAATGATAGACAAGGTTTTTGCATTGCTGGTTGAAAAGACAAAGAAAATCAGTGGAGCCATAGTTGAAAATCACAAATTTTGTGCTTCTGTGCATTATCGACGTGTTGAAGAGAAGAGTTGGGCTGCACTTGCAGAGCAAGTAGCAAGTGTAGTTAAAGAGTATCCTCAATTGCGACTGACACAAGGAAGGAAGGTCTTAGAGATTCGTCCTATAATTAAATGGGACAAAGGAAAAGCCCTTGAATATTTATTAGTGTCACTTGGATTGGCAAATCGGAATGATGTACTACCATTGTATATAGGAGATGATCGTTCAGATGAAGATGCATTTAAGGTACTGCGGGACAGAGGTCAAGGTTATGGGATTCTTGTGTCCACTGCCCCCCAAGAAACAAATGCAGCATATTCACTTAAAGAACCGTCTGAGGTTATGAATTTTTTGAATCGCCTCGTGAATTGGAAGCGGGATTCCAAAAAGCGTCCATTGTCTAAAGTGTAA___ATGGGCATTCGGGATTTGGTATATGGTGATGCCCAGGTTTTGGAATTTGACAATGTGCATAGCAACGCCAGTAATGAAGGGTGGTTTTAAATCCTTTTGACTGATCACCATATCTATATGTAATACACCATCATTTTGTATTTCAAGGAAAAGTTTTTGAGATATCTGCCTAGTTGTCTTTGTAATTGAGCAATGCTCAAGTTGCATGGACATGATAAGTTACGGTGATTTTTATGTCACTGGTTTGTATTCTGTGATAGGAAAGTCATAAATGTTAAGAAAAAGGGGAAAAATGAAAAAAAAATTGGCATCCCCATTTGCTATAGCAATGGCAATGGTTATGCTTACTTTTGTCTTGGAAATATTCAATATTTTGAAGTAATCTTAACAAAGATTGCTTTAACAATGAACATTCTTCCAGAACCTCAATGCATTTATTATCATGGTTCACTGTACACAATAAAGCGAATTTCAATT

Fln Alignment:

sp_v1.1_unigene15386___INAMRASSPTHARQEAAYR----AWTGKHPSALTMFEMMMDASKGKQIVVFLDYDGTLSPIVNDPDRAYMSKQMRATVRKVARYFPTAIITGRCTAKVYEFVKLAELYYAGSHGMDIMGPAKSSKGSKANCSRTTDKKGGVVLYQPASEFLPMIDKVFALLVEKTKKISGAIVENHKFCASVHYRRVEEKSWAALAEQVASVVKEYPQLRLTQGRKVLEIRPIIKWDKGKALEYLLVSLGLANRNDVLPLYIGDDRSDEDAFKVLRDRGQGYGILVSTAPQETNAAYSLKEPSEVMNFLNRLVNWKR
B9HFI0_______________VDSMRASSPTHIKSTPSVNEDQSSWILHHPSALEMFEQIIDASKGKQIVMFLDYDGTLSPIVDDPDKAFMSKQMRATVRKLARFFPTAIVSGRCRDKVYNFVRLAELYYAGSHGMDIKGPAKGSKYKKG---------GDGVVFQAASEFLPMIDEVYEELVEKTKTTPGAKVENNKFCLSVHYRCVDEKKWSGLAQVVKSVLKEYPKLRLTQGRKVLEIRPTIKWDKGKALEFLLESLGFANCTDVFPVYIGDDRTDEDAFKVLRERGQGFGILVSKIPKDTSASYSLQEPTQVMDFLRRLVEWKR

SNPs (tot: 53)

Position	A %	C %	G %	T %	Probability
372		47		52	1.0
409		13		86	0.999973
417		11		77	0.999842
418	11			88	0.999937
424		11	88		0.999952
506		11	88		0.923564
509		11	88		0.923564
510	88		11		0.923564
511	88			11	0.923564
512			11	88	0.923564
520		87	12		0.992554
521		12		87	0.992554
523		87	12		0.992554
525		12	87		0.992554
527	87	12			0.992554
529		12		87	0.992554
530	12	87			0.992554
667	40		60		1.0
795		33		66	0.997452
796			33	66	0.997452
799	66		33		0.997452
800	66			33	0.997452
803		33		66	0.997452
806	60		40		1.0
807			20	80	0.995493
808		20		80	0.995493
809	60	20		20	0.99255
811	20			80	0.995493
812	20	20	60		0.99255
813		80		20	0.995493
815	20		80		0.995493
816		20		80	0.995493
818		80	20		0.995493
820		20		80	0.995493
824		20	80		0.995493
1019	22			77	0.999999
1024			18	81	0.999994
1026		81	18		0.999994
1036	81		18		0.999994
1166	88			11	0.923564
1168			11	88	0.923564
1173	11	88			0.923564
1174		88	11		0.923564
1175		88		11	0.923564
1177	11			88	0.923564
1182	88	11			0.923564
1183	88	11			0.923564
1238	85		14		0.993533
1246		14	85		0.993533
1247	14		85		0.993533
1302		75		25	0.996473
2388	66			33	0.997452
2390	25			75	0.996473

SSRs (tot: 2)

Start position	End position	Sequence	Length
108	128	TGTTT TGTTT TGTTT TGTTT T	21
722	733	TCA TCA TCA TCA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain