SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15380

Length: 2196 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene15380
CGTCGTGACCTTGGCTGTCACTCAACATCGTCGTACTGGCTTGTCGCGGATTCCAAATGAAGCGTTAAACCGAATTGAATTTTGACAATTCATTCATAATACTCCTAAAACAGCTGCTTGTACCGGCGAAATCTACGTCACTCTGTACACGTTTACCCGCTCAGGCCCGTACGTTAAATTCACGTTTGCTTTCCTTCCAATTTTCCGGATCTGCACCGGGCTGGATTTTCTGGATCTGTGCTCGGCTGGTCTCGGACTCGAATTCCCTCTGGTGCATTCTCGGGTTTTTCTTGATCATATAAGCTGAGAATCTTTTCATAAGATGAGCATGTGAGCAGTCAGCCAATACACAATGTGTCGTTTGCTTTGCTGTGCTGGTGCAGAAGAAGAAAGCTTTGTCCCACCTGATAACCATTATCAAAACCAAGGGGCTCATAATGCATATGGAAACCAAGGAGAATCCAAGCCTCAACCAGTGAATAATGGTGCTCCACAGAAGGTTTTACCTATTGAAGCACCTAGTTTGTCACTTGAAGAATTAAAGGAAGCAACAGATAATTTTGGGCCCAAATCTTTGATTGGAGAAGGATCATATGGAAGGGTTTATTATGCGACTTTAAGTAATGGCAAGGCTGCAGCAATTAAGAAATTGGATACTAGCAGCCAGCAAGAGTCTGATTCTGATTTTCTGGCGCAGGTATCAATGGTTTCCAGGCTGAAACATGAGCATGTTGTTGAATTGGTGGGCTATTATGTTGATGCAAATCAACGCATTTTAGCTTACGAGTTTGCAACTATGGGTTCCTTACATGACATTTTACATGGAAGGAAAGGAGTGCAGGGTGCTCAACCAGGCCCAGTTCTTGACTGGATACAAAGGGTGAAAATTGCTGTGGGTGCAGCGAAAGGGCTTGAGTATCTTCATGAGAAAGCTCAACCTCATATCATCCACCGCGATATTAGATCTAGCAATGTTCTTCTTTTTGACGACTTTGCAGCCAAAATTGCTGATTTTAATCTTTCAAATCAAGCTCCTGACATGGCTGCCCGACTTCATTCCACTCGTGTTCTGGGAACTTTTGGCTATCACGCTCCTGAATATGCCATGACAGGTCAGTTGACTCAGAAGAGTGATGTATATAGCTTTGGGGTGGTTCTCCTTGAACTTTTGACAGGAAGGAAGCCTGTGGACCATACAATGCCTAGGGGACAACAAAGCCTTGTTACTTGGGCAACTCCAAGATTGAGTGAAGACAAAGTAAAGCAGTGTGTTGATCCCAAGTTGAAGAGTGAATATCCTCCAAAGGCTGTTGCAAAGATGGCTGCTGTTGCGGCATTGTGTGTGCAGTATGAAGCAGATTTTCGTCCTAACATGAGTATTGTTGTCAAAGCACTTCAGCCATTGCTCAATCCAAAACCGACTCCCTCTGCATCTGAAGCTCAATTATGAAGATTTCATGACATGGTCTTTTCTGTAGTTTCCAAATTTTGTGTCTGTGTTCTGTAGTTGAAATGTAGATTACTAGATAATGGAACTTGCTTATGCAGATCTTATATTCCAATTCTGCTCAGTCGTGGTGGAGGTTGCATACTTCGTATGAAGATTGGTATTTGGATTCTGGATTTATTTGAAGTTGAACAATCAAATTCTTTAGTTCGTTATTGATGGTCGCGTCATATTTGTTGAAGCAACGTAGCATATATTGTAATCCTTGCTATGACTCTTAAATATCACTTGTGGCCCTGTTTATTCTTTAAGACTTCATGTAGGAGGAGTTTTTATTCAAGTCTGATCTACTATGACTTTTGACCACTTCAGGAACATGGATATTGCATTTAAGAAGCAGTTTTCTTGCCTCTCCCTGCACCCAGCCCCCCCTCCAACCTTTAGCAATTGTACAAGATCGAAACACAGGAAATGAGATGGTTCATAACATTTACCTTGTGCCTTATATCACATGTGATATTTCAGATAATTCAATCTATATTTAATCAAGACATGCTTTGCAAAGCTTCCTTTAAATCAATATCTTAATCAGAATTGTTTCTTTAGTCCGTATCTTGCAGGGCTTTTGTTTACACGAACACAAGGGACCATTGTAGGTTAGGCTACAGAATGACATATGAATACTATGGGCAGAGTTGGATGGATACTTGATACTTGATACCATGCATAATGAAAATGTTAGCAAGATA

Ace file of the UniGene sp_v1.1_unigene15380

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Serine/threonine-protein kinase PBS1, putative n=1 Tax=Ricinus communis RepID=B9SX32_RICCO	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	83%
Blast2go	serine threonine-protein kinase	-	-	84%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-tyrosine kinases.	EC:2.7.10.-	-	0.0	84%
Blast2go	Mitogen-activated protein kinase kinase kinase.	EC:2.7.11.25	-	0.0	84%

Source	GOs	Term	Type	Identity
Blast2go	auxin biosynthetic process	GO:0009851	Biological Process	84%
Blast2go	protein phosphorylation	GO:0006468	Biological Process	84%
Blast2go	receptor activity	GO:0004872	Molecular Function	84%
Blast2go	protein tyrosine kinase activity	GO:0004713	Molecular Function	84%
Blast2go	ATP binding	GO:0005524	Molecular Function	84%
Blast2go	MAP kinase kinase kinase activity	GO:0004709	Molecular Function	84%
Blast2go	plasma membrane	GO:0005886	Cellular Component	84%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKU4

Fln msg:

Fln protein: MCRLLCCAGAEEESFVPPDNHYQNQGAHNAYGNQGESKPQPVNNGAPQKVLPIEAPSLSLEELKEATDNFGPKSLIGEGSYGRVYYATLSNGKAAAIKKLDTSSQQESDSDFLAQVSMVSRLKHEHVVELVGYYVDANQRILAYEFATMGSLHDILHGRKGVQGAQPGPVLDWIQRVKIAVGAAKGLEYLHEKAQPHIIHRDIRSSNVLLFDDFAAKIADFNLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLTQKSDVYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWATPRLSEDKVKQCVDPKLKSEYPPKAVAKMAAVAALCVQYEADFRPNMSIVVKALQPLLNPKPTPSASEAQL*

Protein Length: 367

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACATCGTCGTACTGGCTTGTCGCGGATTCCAAATGAAGCGTTAAACCGAATTGAATTTTGACAATTCATTCATAATACTCCTAAAACAGCTGCTTGTACCGGCGAAATCTACGTCACTCTGTACACGTTTACCCGCTCAGGCCCGTACGTTAAATTCACGTTTGCTTTCCTTCCAATTTTCCGGATCTGCACCGGGCTGGATTTTCTGGATCTGTGCTCGGCTGGTCTCGGACTCGAATTCCCTCTGGTGCATTCTCGGGTTTTTCTTGATCATATAAGCTGAGAATCTTTTCATAAGATGAGCATGTGAGCAGTCAGCCAATACACA_-_ATGTGTCGTTTGCTTTGCTGTGCTGGTGCAGAAGAAGAAAGCTTTGTCCCACCTGATAACCATTATCAAAACCAAGGGGCTCATAATGCATATGGAAACCAAGGAGAATCCAAGCCTCAACCAGTGAATAATGGTGCTCCACAGAAGGTTTTACCTATTGAAGCACCTAGTTTGTCACTTGAAGAATTAAAGGAAGCAACAGATAATTTTGGGCCCAAATCTTTGATTGGAGAAGGATCATATGGAAGGGTTTATTATGCGACTTTAAGTAATGGCAAGGCTGCAGCAATTAAGAAATTGGATACTAGCAGCCAGCAAGAGTCTGATTCTGATTTTCTGGCGCAGGTATCAATGGTTTCCAGGCTGAAACATGAGCATGTTGTTGAATTGGTGGGCTATTATGTTGATGCAAATCAACGCATTTTAGCTTACGAGTTTGCAACTATGGGTTCCTTACATGACATTTTACATGGAAGGAAAGGAGTGCAGGGTGCTCAACCAGGCCCAGTTCTTGACTGGATACAAAGGGTGAAAATTGCTGTGGGTGCAGCGAAAGGGCTTGAGTATCTTCATGAGAAAGCTCAACCTCATATCATCCACCGCGATATTAGATCTAGCAATGTTCTTCTTTTTGACGACTTTGCAGCCAAAATTGCTGATTTTAATCTTTCAAATCAAGCTCCTGACATGGCTGCCCGACTTCATTCCACTCGTGTTCTGGGAACTTTTGGCTATCACGCTCCTGAATATGCCATGACAGGTCAGTTGACTCAGAAGAGTGATGTATATAGCTTTGGGGTGGTTCTCCTTGAACTTTTGACAGGAAGGAAGCCTGTGGACCATACAATGCCTAGGGGACAACAAAGCCTTGTTACTTGGGCAACTCCAAGATTGAGTGAAGACAAAGTAAAGCAGTGTGTTGATCCCAAGTTGAAGAGTGAATATCCTCCAAAGGCTGTTGCAAAGATGGCTGCTGTTGCGGCATTGTGTGTGCAGTATGAAGCAGATTTTCGTCCTAACATGAGTATTGTTGTCAAAGCACTTCAGCCATTGCTCAATCCAAAACCGACTCCCTCTGCATCTGAAGCTCAATTATGA___AGATTTCATGACATGGTCTTTTCTGTAGTTTCCAAATTTTGTGTCTGTGTTCTGTAGTTGAAATGTAGATTACTAGATAATGGAACTTGCTTATGCAGATCTTATATTCCAATTCTGCTCAGTCGTGGTGGAGGTTGCATACTTCGTATGAAGATTGGTATTTGGATTCTGGATTTATTTGAAGTTGAACAATCAAATTCTTTAGTTCGTTATTGATGGTCGCGTCATATTTGTTGAAGCAACGTAGCATATATTGTAATCCTTGCTATGACTCTTAAATATCACTTGTGGCCCTGTTTATTCTTTAAGACTTCATGTAGGAGGAGTTTTTATTCAAGTCTGATCTACTATGACTTTTGACCACTTCAGGAACATGGATATTGCATTTAAGAAGCAGTTTTCTTGCCTCTCCCTGCACCCAGCCCCCCCTCCAACCTTTAGCAATTGTACAAGATCGAAACACAGGAAATGAGATGGTTCATAACATTTACCTTGTGCCTTATATCACATGTGATATTTCAGATAATTCAATCTATATTTAATCAAGACATGCTTTGCAAAGCTTCCTTTAAATCAATATCTTAATCAGAATTGTTTCTTTAGTCCGTATCTTGCAGGGCTTTTGTTTACACGAACACAAGGGACCATTGTAGGTTAGGCTACAGAATGACATATGAATACTATGGGCAGAGTTGGATGGATACTTGATACTTGATACCATGCATAATGAAAATGTTAGCAAGATA

Fln Alignment:

sp_v1.1_unigene15380___MCRLLCCAGAEEESFVPPDNHYQNQGAHNAYGNQGESKP-QPVNNGAPQKVLPIEAPSLSLEELKEATDNFGPKSLIGEGSYGRVYYATLSNGKAAAIKKLDTSSQQESDSDFLAQVSMVSRLKHEHVVELVGYYVDANQRILAYEFATMGSLHDILHGRKGVQGAQPGPVLDWIQRVKIAVGAAKGLEYLHEKAQPHIIHRDIRSSNVLLFDDFAAKIADFNLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLTQKSDVYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWATPRLSEDKVKQCVDPKLKSEYPPXXXXXXXXXXXLCVQYEADFRPNMSIVVKALQPLLNPKPTPSASEAQ
B8LKU4_______________MRRWFCCACSTEGAPEQPENQFLNAAKNNGNGFQGDYKASEGAKSGPPQKVPPIEAPSLSLDELKEATDNFGPKALIGEGSYGRVYYATLSDGQPAAIKKLDVSNQPEANAEFLAQVSMVSRLKHDHIVELVGYCVEGTLRVLAYEFATMGSLHDILHGRKGVQGAQPGPVLDWMQRVKIAVGAAKGLEYLHEKAQPHIIHRDIRSSNVLLFDDFKAKIADFNLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLTQKSDVYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWATPRLSEDKVKQCVDPKLKGEYPPKAVAKLAAVAALCVQYEADFRPNMSIVVKALQPLLTPKPAIPASEPQ

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
1874	27			72	1.0
1876		66		33	1.0
1996	20	20		60	0.99255
1997		80		20	0.995493
1999	75	25			0.996473
2014	33		66		0.997452
2019		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain