SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15370

Length: 1346 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene15370

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Ubiquitin-conjugating enzyme E2 I n=4 Tax=Andropogoneae RepID=B6SLY7_MAIZE	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	80%
Blast2go	sumo-conjugating enzyme	-	-	85%

Source	GOs	Term	Type	Identity
Blast2go	regulation of protein metabolic process	GO:0051246	Biological Process	85%
Blast2go	post-translational protein modification	GO:0043687	Biological Process	85%
Blast2go	small conjugating protein ligase activity	GO:0019787	Molecular Function	85%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NRG7

Fln msg: Overlapping hits, possible frame ERROR between 768 and 704,

Fln protein: MSGGIARGRLAEERKAWRKNHPHGFVARPETQPDGSLNLMVWQCILPGKLGTDWEGGYFPLAIHFSEDYPSKPPxxxxxxxxxxxxxxxxxxxxxxxILNEDSGWRPAITVKQILIGIQDLLDQPNPSDPAQTDAYQLFIQDPPEYKRRVRQQAKQYPPPV*

Protein Length: 163

Fln nts: ATGGGGAGATACAGAAATACGAAGGAAAACCACAACTTCATGTTGTTTATTTATAATGAAATTCTCTTCTTCCCATCGGTCTCGAATTGCTCATCAATCAAGTTTGGATTTCTCTCGGCAGAGTTGCTTTCGGCACCGCTTTCACTTTTTGTAAATGTTGTTTCAGAATCTATTGACCAGGTTTGATGCCTCTGGGCCATTATATCAATATTAAATTAAATTCTCAAGGAACGAGGCGGGAACATCGGATGACCATTCCTCCGGACTTGAAGCGAAAATTCAAACTGCTTCATAAAATATCCTTTCACCTCTCCAACCCTGTTTGATTGCAAGCACTTTTTCTTATTTGTTCGCCGGGGTTCGGAGAATTTTCTGTTCGAAGATAAAATACCGGGGGGCAAGGGTTTGCTGAACGGCAAATTAGCTACCGAGTAATTGTCATTACAGAGGTTTTCAAATCCTGCAAACCCTCGGCACAGC_-_ATGTCTGGAGGCATAGCTCGCGGTCGTCTTGCTGAGGAGCGAAAGGCCTGGCGAAAAAATCACCCCCATGGTTTTGTTGCAAGGCCCGAGACTCAGCCAGATGGTTCCCTTAACTTAATGGTGTGGCAGTGCATCCTTCCAGGCAAACTTGGGACGGACTGGGAGGGTGGTTACTTCCCTCTAGCAATTCATTTCAGTGAGGATTACCCAAGTAAACCTCCAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxATCCTTAATGAGGACTCTGGGTGGCGGCCAGCCATTACTGTGAAGCAAATTCTGATTGGTATTCAAGACCTTTTAGATCAACCAAATCCATCTGATCCGGCACAAACAGATGCCTACCAACTTTTTATCCAAGATCCCCCAGAATACAAACGAAGAGTTCGACAGCAGGCAAAACAATATCCACCTCCGGTGTGA___TGATTGGCTAGACAATACCTTCTGCTAGTATCATGGGTTTGGATTTATAGACTATTGTTAAATCCAGGATGTAATGTTCACTGAAGTGAATGTAATGTTTGAAAAAGATATTGAAAAGATTATGTATCATAAACATCTGATTTTTGCTTGTCTGTGGAAGTTTTCTTCAACTGGATACTAGTTCACTAATAAATGTAATTTTGGAGGGGTATTTCATCTCTTGTGGCTTTTAAATTTGCCTTTTACTTGCCTTAACGTTGCAGTAGCCAATACGACAATGTATTTGGTAGTTAATCATGGTTTTGTTGAATCTTCCCATTGTCATTAATTGCTGCTTGTGCTTGGTTGTCACGGTTATGATTCTAGTAATATGTAATCAATT

Fln Alignment:

sp_v1.1_unigene15370___MSGGIARGRLAEERKAWRKNHPHGFVARPETQPDGSLNLMVWQCILPGKLGTDWEGGYFPLAIHFSEDYPSKPPxxxxxxxxxxxxxxxxxxxxxxxLNEDSGWRPAITVKQILIGIQDLLDQPNPSDPAQTDAYQLFIQDPPEYKRRVRQQAKQYPPPV
A9NRG7_______________MSGGIARGRLAEERKAWRKNHPHGFVARPETQQDGSLNLMVWQCILPGKPGTDWEGGYFPLTIHFSEDYPSKPPxxxxxxxxxxxxxxxxxxxxxxxLNEDSGWRPAITVKQILIGIQDLLDQPNPSDPAQTDAYQLFIQDPPEYKRRVRQQAKQYPPPV

SNPs (tot: 32)

Position	A %	C %	G %	T %	Probability
664	25	75			0.996473
666		75	25		0.996473
667			25	75	0.996473
668	75		25		0.996473
716	85			14	0.993533
717	85	14			0.993533
720			14	85	0.993533
721	14	85			0.993533
725		85		14	0.993533
726	85		14		0.993533
727	85		14		0.993533
728		14	85		0.993533
729			85	14	0.993533
732		14		85	0.993533
733	14			85	0.993533
734		14		85	0.993533
736		14		85	0.993533
737	14	85			0.993533
907	50		50		1.0
985	96		3		0.999929
1050	97		2		0.971188
1176	57		28		1.0
1177	16		75		0.99999
1183	11			88	0.923564
1184	11			88	0.923564
1192			12	87	0.992554
1203	20			80	0.995493
1209			75	25	0.996473
1210		75	25		0.996473
1211		25		50	0.995533
1248	50		50		1.0
1319		33	66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain