SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15364

Length: 1050 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene15364

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	60S ribosomal protein L24, putative; K02896 large subunit ribosomal protein L24e	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	60s ribosomal protein	-	-	82%

Source	ECs	Term	Type	e value	Identity
Blast2go	Protein-synthesizing GTPase.	EC:3.6.5.3	-	0.0	82%

Source	GOs	Term	Type	Identity
Blast2go	ribosome biogenesis	GO:0042254	Biological Process	82%
Blast2go	translation	GO:0006412	Biological Process	82%
Blast2go	structural constituent of ribosome	GO:0003735	Molecular Function	82%
Blast2go	catalytic activity	GO:0003824	Molecular Function	82%
Blast2go	nucleolus	GO:0005730	Cellular Component	82%
Blast2go	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	82%

Source	InterPros	Term	Type	Identity
Blast2go	Ribosomal protein L24e-related	IPR000988	-	82%
Blast2go	TRASH	IPR011017	-	82%
Blast2go	Ribosomal protein L24e domain	IPR023441	-	82%
Blast2go	Ribosomal protein L24e, conserved site	IPR023442	-	82%

Full-Lengther Next Prediction

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
118	66		33		0.997452
136	33			66	1.0
160		75	25		0.996473
213		23	76		1.0
220	23		76		1.0
339		33	66		1.0
662	80		20		0.995493
722		85	14		0.993533
748		50	50		1.0
801	80	20			0.995493
833			80	20	0.995493
849		25		75	0.996473
907		42		57	1.0
924		73		26	1.0
925	46	53			1.0
943		26		73	1.0
944		20		80	1.0
1047	25	75			0.996473
1048		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain