SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15359

Length: 1153 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene15359

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Stress responsive protein n=3 Tax=Zea mays RepID=B6STP1_MAIZE	-	-	2.00386e-43	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	71%
Blast2go	stress responsive protein	-	-	0.0	72%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Ricin B-related lectin	IPR008997	-	0.0	72%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NRP6

Fln msg: your sequence is longer than subject: 280 - 231

Fln protein: MAYYGEYDSCQERNQRIYESPPISGYGYQQQPSRPLSDPCLNVTEGGHGFNEYGGPAASNKYSAGGGYMMNQSGYQQQPPRPPRDPCPNATGGGYGVNEYGGPAVYNKYNAGGGCMMNGQRIIPQGQIVRMCSKANPDYALAIRDGSAVMLFYNPNDPTMQWVKDESWSNQVRDQVGHPAFALVNKATGQALRHAIAESQEVLVTQYEGPSNYDENILWSESEDMGYGYRTIRMANNIGLNLDAFHSDRRSGGIRDGTRAVLWKWNKQDNQLWKLSPCY*

Protein Length: 281

Fln nts: TACATGGGACCACCATCATCTCGTTTAGTAATTTGTGTTTATTTCAAGAGTATTTAGCGTTTGGCATACTGTGAATCAATCAATCC_-_ATGGCATACTATGGGGAGTACGATTCATGCCAAGAGAGGAACCAGAGGATTTACGAGTCCCCGCCTATTTCAGGCTATGGCTATCAGCAGCAGCCGTCACGTCCCCTTAGCGACCCATGCCTAAATGTAACAGAAGGAGGCCATGGATTTAACGAGTATGGAGGCCCCGCTGCCTCTAACAAGTATAGTGCAGGAGGAGGCTACATGATGAACCAGAGTGGCTATCAGCAGCAGCCACCACGTCCCCCTCGCGACCCATGTCCTAATGCAACAGGAGGAGGCTATGGAGTTAATGAATATGGAGGCCCTGCAGTTTATAACAAGTATAATGCAGGAGGTGGCTGCATGATGAACGGCCAGCGAATAATTCCACAAGGCCAGATCGTGAGGATGTGCTCTAAGGCAAATCCTGACTACGCTTTGGCTATCAGAGATGGCAGTGCCGTCATGCTCTTCTACAATCCCAATGATCCCACAATGCAATGGGTGAAGGATGAAAGCTGGAGTAACCAGGTGAGGGACCAAGTGGGTCATCCTGCATTTGCTCTGGTGAACAAAGCCACTGGTCAAGCTCTCCGCCATGCCATTGCTGAAAGTCAGGAGGTGCTGGTCACTCAGTACGAGGGCCCCTCCAATTATGATGAGAACATATTGTGGAGTGAGAGTGAGGACATGGGTTATGGATATCGAACAATAAGAATGGCCAACAACATTGGGCTCAACTTGGACGCATTCCACAGCGACAGGAGGAGCGGAGGCATCAGAGATGGCACTCGCGCTGTGCTGTGGAAATGGAACAAGCAGGACAACCAGCTCTGGAAGCTCTCTCCATGCTATTAA___TTGCTGCATGCATATAATATATCTAGTATTATACTATGTTACTGTTAACATGGCTGGCATGAGTAGGAGATGATGCAATGCATAGCATAGCGTAGCAGCTACCACATGGATACGAAAGGATAGGATGGCTGATTATTATAAGATCACGAAATATAGAGTAGTGACAGACACGTCTGTGTGTGTATGTAGCTTTCTATCATCTCATAAATAAATAAGCCTTTTCATAC

Fln Alignment:

sp_v1.1_unigene15359___MAYYG--EYDSCQERNQRIYESPPISGYGYQQQPSRPLSDPCLNVTEGGHGFNEYGGPAASNKYSAGGGYMMNQSGYXXXXXXXXXXXXXNATXXXXXXXXXXXPAVYNKYNAGGGCMMNGQRIIPQGQIVRMCSKANPDYALAIRDGSAVMLFYNPNDPTMQWVKDESWSNQVRDQVGHPAFALVNKATGQALRHAIAESQEVLVTQYEGPSNYDENILWSESEDMGYGYRTIRMANNIGLNLDAFHSDRRSGGIRDGTRAVLWKWNKQDNQLWKLSPCY
A9NRP6_______________MAYYGDYEYDSYQESNERIYERPPSSGYGHQPQLARP---PCQNATQGGYGFNEYGGRAAC-----------------------------------------------NKFNAGGGCMRNSQQIIPQGQIVRVCSKANPDYALAIRDGRAVMVFYNPNDPTMQWVKDESWSNQVRDQVGHPAFALVNKATGQALRHAIAESQEVLLTQYKGPSTYDENILWSESEDMGYGYRTVRMANNIGLNLDAFQGDRRNGGIRDGTRAVLWKWNKQDNQLWKLSPCY

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
649		88		11	0.923564
953		75		25	0.996473
970	61		38		1.0
989	66		33		1.0
1003	31	62			1.0
1004	31			68	1.0
1005	68			31	1.0
1018	68		31		1.0
1019			68	31	1.0
1020	31	68			1.0
1029		26		73	1.0
1030	21		78		1.0
1148		14		85	0.993533
1151		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain