SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15341

Length: 1611 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene15341

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	PtrCDKA-1; cyclin-dependent kinase 1; K02087 cyclin-dependent kinase 1 [EC:2.7.11.22]	-	-	93%
FL-Next	tr=Cdc2Pa protein; Picea abies (Norway spruce) (Picea excelsa).	-	-	99%
Blast2go	cyclin dependent kinase a	-	-	97%

Source	ECs	Term	Type	e value	Identity
Blast2go	[RNA-polymerase]-subunit kinase.	EC:2.7.11.23	-	0.0	97%
Blast2go	Cyclin-dependent kinase.	EC:2.7.11.22	-	0.0	97%

Source	ECs	Term	Type	e value	Identity
AutoFact	Cyclin-dependent kinase.	EC:2.7.11.22	-	0.0	93%

Source	GOs	Term	Type	Identity
Blast2go	auxin biosynthetic process	GO:0009851	Biological Process	97%
Blast2go	protein phosphorylation	GO:0006468	Biological Process	97%
Blast2go	mitosis	GO:0007067	Biological Process	97%
Blast2go	cell division	GO:0051301	Biological Process	97%
Blast2go	RNA polymerase II carboxy-terminal domain kinase activity	GO:0008353	Molecular Function	97%
Blast2go	ATP binding	GO:0005524	Molecular Function	97%
Blast2go	cyclin-dependent protein kinase activity	GO:0004693	Molecular Function	97%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	97%
Blast2go	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	97%
Blast2go	Serine/threonine-protein kinase, active site	IPR008271	-	97%
Blast2go	Protein kinase-like domain	IPR011009	-	97%
Blast2go	Protein kinase, ATP binding site	IPR017441	-	97%
Blast2go	Serine/threonine-protein kinase-like domain	IPR017442	-	97%
Blast2go	Tyrosine-protein kinase, catalytic domain	IPR020635	-	97%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q43361

Fln msg:

Fln protein: MEQYEKVEKIGEGTYGVVYKARDRLTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKRLYLVFEYLDLDLKKHMDSCPELAKDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRKTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEETWPGVTSLPDFKSAFPKWPAKDLATVVPGLEPAGIDILSKMLCLEPSRRITARSALEHEYFKDLGFVP*

Protein Length: 296

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAGGGCGCGCATAGTAACTGCGAATGGAGGAAGAGAGAGGGAGGCAAAGGCAATTGAGGGCGAGGGCGAGCGTAAAGGGTAAGGGTACGTGTCCTAGGCTGATAACCTCGTGTTGTTTTCGTTGGGTGAGCTCCCGCCAGAACCCTTGCTTCTATTAAAGAAAACCACAATCCGTAGTCGAACAGATCCTCATTCTCCATCAAATTTGCCGATTTTCATTCATTTAAATCCCTCGTTCTCTCGCTCGCTCTGCACTGGCGTTGGAGTTCTTCGAGAATGCGTGTCTGAATCTTTGAATCTAGAGATTTCTCTCTAAATATTCCGACGGGTGCAGAGAAAAAGTCGAACAGAACGGGATCTTGAATCAGGCTGA_-_ATGGAACAGTATGAGAAAGTTGAGAAGATAGGAGAAGGAACATATGGTGTGGTTTACAAGGCCCGTGATCGCTTGACAAATGAGACCATAGCTCTCAAGAAAATTCGTTTGGAGCAAGAAGATGAGGGTGTACCAAGCACTGCGATTAGAGAAATTTCTCTTCTTAAAGAAATGCAACATGGGAACATCGTAAGGTTGCAAGATGTTGTCCATAGTGAAAAGCGGCTCTATTTAGTTTTCGAGTATTTGGACTTGGACCTCAAGAAGCATATGGATTCTTGCCCTGAGCTAGCAAAGGATCCTCGTCTAATCAAAACATTTCTGTATCAGATTCTGCGTGGCATTGCGTATTGTCATTCTCATCGAGTTCTTCATCGTGATCTGAAGCCGCAAAATTTGCTTATTGACCGCAAAACCAACGCGTTGAAACTTGCTGATTTTGGACTTGCCAGGGCATTTGGAATTCCAGTGAGGACCTTTACTCATGAGGTGGTTACATTGTGGTATCGTGCACCAGAGATCTTACTTGGTTCCCGACATTATTCGACTCCTGTTGATGTTTGGTCTGTTGGATGTATCTTTGCTGAAATGGTTAATCAGCGACCACTTTTCCCAGGAGACTCAGAGATTGATGAGCTCTTTAAGATATTTAGAGTGCTGGGGACGCCAAATGAAGAAACATGGCCAGGAGTCACCTCTCTGCCTGACTTCAAGTCAGCCTTCCCAAAGTGGCCAGCCAAGGATTTGGCAACTGTGGTTCCAGGTCTTGAGCCAGCAGGAATTGACATTCTCTCGAAAATGTTGTGCCTGGAGCCCAGTAGACGCATCACTGCTCGTAGTGCGCTGGAGCACGAGTATTTCAAAGATCTAGGTTTTGTACCCTGA___CCTGTATATTAGCTGTGGGGATAAAAAGATTATAGGACTGTTGTAGTGTAGCTTGCATCTTCTCACCAGTGAGTTGCTCTTTGGAGGCTGGTAAACTAGATGGAAACCTGTATAAGTAACATGATTAAGACACTTGTTAAGGATTTGCACCTTTGGTGTAGCTGGATTGTGGTGGTTCTAGTTCTTCAAGAATATTGAACAAAACTTTATTTGGAAATTAAGTTGTTTACGATTGTCAAATATGACTGATCATTTGAAATTCTTTAGCCATCTGTTGTTACTGACTGGGTATTTTATAATATTGTGCAATCTGGTTTTCTATTGACTTT

Fln Alignment:

sp_v1.1_unigene15341___MEQYEKVEKIGEGTYGVVYKARDRLTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKRLYLVFEYLDLDLKKHMDSCPELAKDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRKTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEETWPGVTSLPDFKSAFPKWPAKDLATVVPGLEPAGIDILSKMLCLEPSRRITARSALEHEYFKDLGFVP
Q43361_______________MEQYEKVEKIGEGTYGVVYKARDRLTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKRLYLVFEYLDLDLKKHMDSCPELAKDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRKTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEETWPGVTSLPDFKSAFPKWPAKDLATVVPGLEPAGIDLLSKMLCLEPSKRITARSALEHEYFKDLGFVP

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
1399		5		94	0.999994
1466		25		74	1.0
1469		25		74	1.0
1474	73			26	1.0
1513	64		35		1.0
1537		11		88	0.923564
1566	66		33		0.997452
1582	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain