SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15331

Length: 2800 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene15331
CGTCGTGACCTTGGCTGTCAATGGGGAGGACGAACAGAGCGAGCTAGGCATTGTTGCAGGGATCTTTGAAGATTTGAAGCTTGGAAGCAGCGCACCGATCGCCGCAGGGGCTTTTCAAGATTTGGAGCTTGGAAGCAGTGTACCGATCGTCTCAGGCGATACTGAGAGTGAGTGCCGTTGGACTCCCGAACGTTTAGCTTCTTCAGGTTCCATCCGTTGTTGCGTCGGCAGATACTTTTATCCTAAATTTCAATTTGTTGCACTTTGAAGCCTAGAGGGGTAAGATCTTCAAAATCTTGGAGTTCCAATGAATTTTCTCGCGTTGTTTTCATCAATGGCCGCCGGCAAAGACGAGACTTCTGCCTCAGCCGGTGAGGTCGAAACCGTCAAAGCCGAGGCAGGAGCGGTGAAAACGGTAGAGGCCAATGGAACTGATGAAACTGTCAAAGCCGAAGTAGTCGAGGTGGCGGAGGCTAATGGAAATGGTGCTGCAGAGAGCAGTCCTGTAATAGAGCCACAGCTGACTTCATTCAAGGAGGAGAGCAACTTCGTTTCTGATTTGAAGGAATCAGAGAGGAAAGCATTGCAGGAGTTGAAATGCCGGATCGAGGAAGCAATCATGAAAAATGAATTCAGCGAGCATGAAAACAAGAAATCCGATGGTAAGGATGGTGACGCCAAAGAAACCGAGGCAGAGAAGCCTGCAGATGAGAAAGAAGCGGAGAAGGAAGAACTGAAAGTTCTAGAGACTGTAACGGAAACTGACGTTAAAGTTGGAGACGTGGAGGTGAAAAATGAAGAAAACGAGGTAATTGTGACAGAAGAGCTTTCTGACAAGAAAGCTGTTGAAGAACAGGGGCCTAAAGTCGAAGAAAGCGTTGTTGTAGAAACCGTTACAATCACCAGCGAGACTCTGGACGCATCGGCTTCTGGTGCTGAGAATGCTTCAGAGGCTAAAGCTGTTGAATCTGGAGCTGTAACTGGTGAAGCGGAAACTGTGGAAGTCACTGTAGAGACTTTCGAAGCTGAAACAGAGAAATTTAAGGCCCCAGATGTTTATCTCTGGGGAGTTCCTCTGCTTCACACCAAAGGAGACGAGAGAACTGATGTGATTCTGTTGAAATTTCTCCGAGCGAGGGACTTCAAAGTACAGGAAGCCTTTGAAATGCTGAAGAACACCGTTCTGTGGAGGAAGAGCTTCAAAACGGACTCCATATTGGAAGAAGACTTCGGTAATGACCTTGATGGAGTAGCTTACATGAACGGATATGACAAAGAAGGTCATCCCGTTTGTTACAATGTTTATGGTGTCTTCCAGGATAAGGAACTTTATCAGAAGACTTTTGGCACAGAAGAGAAACGCCAGAGGTTCTTGCGATGGAGAGTTCAGTTACTGGAGAAGGGGATTCAGCAGCTCAGTTTCAGCCCTGGGGGCGTGAACTCCATGGTTCAGATCACTGATCTGAAGAATTCCCCCGGGCCTGGAAAGAAAGAGTTGAGACAAGCTACCAAGCAGGCTTTGGATCTTCTGCAGGACAATTATCCCGAGTTCGTTGCCCGAAAGATTTTTATCAACGTGCCTTGGTGGTACTTTGCATTGAGCACAATGATATCGCCGTTCATCACACAGAGAACGAAGAGCAAGTTTGTGATCGCTCGGGCATCTAAAGTCACTGAGACTCTATTCAAGTACATATCCCCAGAATATGTGCCAGTGCAGTATGGTGGTTTGAATAGAGAAAACGATCAAGAATTCTCTGGTGCAGATGGCGGAGTTACGGAGTTGATCATCAAAGCAGGAACCAAGCAAATCATAGACATTCCAGCTACAGAGGTTGGTACCAGTCTGGTCTGGGACTTAACTGTTGTTGGCTGGGAAGTAAGCTACAAGGAAGAGTTCATCCCCAGCGCGGAGGGTTGTTATACTGTCATCATTCAAAAGGAGAAGAAAATGGCAGCCCATGAAGAAGCTGTTCGTAATTCCTTCAAAATTGGAGAGGCGGGAAAGGTTGTATTGACCATCGACAATCTTTCTTCCAGAAAGAAGAAACTCATCTACAGAAGCAAGGTGAAGAGGCATCTGTAATGGGCACGCGGTGCAATATGTGATTACTCTCTTATTTTGAGATGGCGTTTTTCAGGCTATGGAGGGCTGCTGTTAAATTATTTTAGATTTCGAAGTCCACAGGTTGAGTGTATGTCCAGGGCAGGACGGGCAGGCACAGTAGCCCTGGACTATTTTCTGCTGTCAAATATCCGCCTCGTCGCGGAAGTTGTAAAGCGTGTGTGGTAACCGTCGGCTGCGGTGCAGCCGATACAGGCATGTTCTATTCTATACAGGCATATTCTGACCGATTTGTGCGAATAATACGCTGTTTTGTGATAAGGATTTTTGTATCTAGGCTACCAAAAATATGTCTACCGGGGGCTTGTTATTTATTATTATTCATATCGTTGTATCTTCTTCCATATTTATTAATTTTAAGATTTTTGGCACAGGGATCTATTTTGTTGTCTTTTCGTACTGCGGCGGGGTTGCTCCGAGCCTCATTATTATTCCCCTATGTGATTTTAACGTCTTCCCATCTCCCATTTCTTGAAATGGATGTTTGTGTATCCAATGCATATACTTTTGTTTTTCATCTGCAAAAGTTCCAAAAGCTGCATCTGCATGCTCTATGAGCTCCATGTGGCTTTCTTATTTGAATTACAGGATATTGAACTTCACGTGGGCCCAGTTTATGCTTTTCAGGAGCATATTCCTTTTGATAGGGTTTTGTATTTTCAAAGCTGTACAAAC

Ace file of the UniGene sp_v1.1_unigene15331

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	CRAL_TRIO multi-domain protein	-	-	4.0e-20	34%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%
Blast2go	patellin-	-	-	0.0	80%

Source	GOs	Term	Type	Identity
Blast2go	transport	GO:0006810	Biological Process	80%
Blast2go	transporter activity	GO:0005215	Molecular Function	80%
Blast2go	intracellular	GO:0005622	Cellular Component	80%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQX3

Fln msg:

Fln protein: MNFLALFSSMAAGKDETSASAGEVETVKAEAGAVKTVEANGTDETVKAEVVEVAEANGNGAAESSPVIEPQLTSFKEESNFVSDLKESERKALQELKCRIEEAIMKNEFSEHENKKSDGKDGDAKETEAEKPADEKEAEKEELKVLETVTETDVKVGDVEVKNEENEVIVTEELSDKKAVEEQGPKVEESVVVETVTITSETLDASASGAENASEAKAVESGAVTGEAETVEVTVETFEAETEKFKAPDVYLWGVPLLHTKGDERTDVILLKFLRARDFKVQEAFEMLKNTVLWRKSFKTDSILEEDFGNDLDGVAYMNGYDKEGHPVCYNVYGVFQDKELYQKTFGTEEKRQRFLRWRVQLLEKGIQQLSFSPGGVNSMVQITDLKNSPGPGKKELRQATKQALDLLQDNYPEFVARKIFINVPWWYFALSTMISPFITQRTKSKFVIARASKVTETLFKYISPEYVPVQYGGLNRENDQEFSGADGGVTELIIKAGTKQIIDIPATEVGTSLVWDLTVVGWEVSYKEEFIPSAEGCYTVIIQKEKKMAAHEEAVRNSFKIGEAGKVVLTIDNLSSRKKKLIYRSKVKRHL*

Protein Length: 594

Fln nts: CGTCGTGACCTTGGCTGTCAATGGGGAGGACGAACAGAGCGAGCTAGGCATTGTTGCAGGGATCTTTGAAGATTTGAAGCTTGGAAGCAGCGCACCGATCGCCGCAGGGGCTTTTCAAGATTTGGAGCTTGGAAGCAGTGTACCGATCGTCTCAGGCGATACTGAGAGTGAGTGCCGTTGGACTCCCGAACGTTTAGCTTCTTCAGGTTCCATCCGTTGTTGCGTCGGCAGATACTTTTATCCTAAATTTCAATTTGTTGCACTTTGAAGCCTAGAGGGGTAAGATCTTCAAAATCTTGGAGTTCCA_-_ATGAATTTTCTCGCGTTGTTTTCATCAATGGCCGCCGGCAAAGACGAGACTTCTGCCTCAGCCGGTGAGGTCGAAACCGTCAAAGCCGAGGCAGGAGCGGTGAAAACGGTAGAGGCCAATGGAACTGATGAAACTGTCAAAGCCGAAGTAGTCGAGGTGGCGGAGGCTAATGGAAATGGTGCTGCAGAGAGCAGTCCTGTAATAGAGCCACAGCTGACTTCATTCAAGGAGGAGAGCAACTTCGTTTCTGATTTGAAGGAATCAGAGAGGAAAGCATTGCAGGAGTTGAAATGCCGGATCGAGGAAGCAATCATGAAAAATGAATTCAGCGAGCATGAAAACAAGAAATCCGATGGTAAGGATGGTGACGCCAAAGAAACCGAGGCAGAGAAGCCTGCAGATGAGAAAGAAGCGGAGAAGGAAGAACTGAAAGTTCTAGAGACTGTAACGGAAACTGACGTTAAAGTTGGAGACGTGGAGGTGAAAAATGAAGAAAACGAGGTAATTGTGACAGAAGAGCTTTCTGACAAGAAAGCTGTTGAAGAACAGGGGCCTAAAGTCGAAGAAAGCGTTGTTGTAGAAACCGTTACAATCACCAGCGAGACTCTGGACGCATCGGCTTCTGGTGCTGAGAATGCTTCAGAGGCTAAAGCTGTTGAATCTGGAGCTGTAACTGGTGAAGCGGAAACTGTGGAAGTCACTGTAGAGACTTTCGAAGCTGAAACAGAGAAATTTAAGGCCCCAGATGTTTATCTCTGGGGAGTTCCTCTGCTTCACACCAAAGGAGACGAGAGAACTGATGTGATTCTGTTGAAATTTCTCCGAGCGAGGGACTTCAAAGTACAGGAAGCCTTTGAAATGCTGAAGAACACCGTTCTGTGGAGGAAGAGCTTCAAAACGGACTCCATATTGGAAGAAGACTTCGGTAATGACCTTGATGGAGTAGCTTACATGAACGGATATGACAAAGAAGGTCATCCCGTTTGTTACAATGTTTATGGTGTCTTCCAGGATAAGGAACTTTATCAGAAGACTTTTGGCACAGAAGAGAAACGCCAGAGGTTCTTGCGATGGAGAGTTCAGTTACTGGAGAAGGGGATTCAGCAGCTCAGTTTCAGCCCTGGGGGCGTGAACTCCATGGTTCAGATCACTGATCTGAAGAATTCCCCCGGGCCTGGAAAGAAAGAGTTGAGACAAGCTACCAAGCAGGCTTTGGATCTTCTGCAGGACAATTATCCCGAGTTCGTTGCCCGAAAGATTTTTATCAACGTGCCTTGGTGGTACTTTGCATTGAGCACAATGATATCGCCGTTCATCACACAGAGAACGAAGAGCAAGTTTGTGATCGCTCGGGCATCTAAAGTCACTGAGACTCTATTCAAGTACATATCCCCAGAATATGTGCCAGTGCAGTATGGTGGTTTGAATAGAGAAAACGATCAAGAATTCTCTGGTGCAGATGGCGGAGTTACGGAGTTGATCATCAAAGCAGGAACCAAGCAAATCATAGACATTCCAGCTACAGAGGTTGGTACCAGTCTGGTCTGGGACTTAACTGTTGTTGGCTGGGAAGTAAGCTACAAGGAAGAGTTCATCCCCAGCGCGGAGGGTTGTTATACTGTCATCATTCAAAAGGAGAAGAAAATGGCAGCCCATGAAGAAGCTGTTCGTAATTCCTTCAAAATTGGAGAGGCGGGAAAGGTTGTATTGACCATCGACAATCTTTCTTCCAGAAAGAAGAAACTCATCTACAGAAGCAAGGTGAAGAGGCATCTGTAA___TGGGCACGCGGTGCAATATGTGATTACTCTCTTATTTTGAGATGGCGTTTTTCAGGCTATGGAGGGCTGCTGTTAAATTATTTTAGATTTCGAAGTCCACAGGTTGAGTGTATGTCCAGGGCAGGACGGGCAGGCACAGTAGCCCTGGACTATTTTCTGCTGTCAAATATCCGCCTCGTCGCGGAAGTTGTAAAGCGTGTGTGGTAACCGTCGGCTGCGGTGCAGCCGATACAGGCATGTTCTATTCTATACAGGCATATTCTGACCGATTTGTGCGAATAATACGCTGTTTTGTGATAAGGATTTTTGTATCTAGGCTACCAAAAATATGTCTACCGGGGGCTTGTTATTTATTATTATTCATATCGTTGTATCTTCTTCCATATTTATTAATTTTAAGATTTTTGGCACAGGGATCTATTTTGTTGTCTTTTCGTACTGCGGCGGGGTTGCTCCGAGCCTCATTATTATTCCCCTATGTGATTTTAACGTCTTCCCATCTCCCATTTCTTGAAATGGATGTTTGTGTATCCAATGCATATACTTTTGTTTTTCATCTGCAAAAGTTCCAAAAGCTGCATCTGCATGCTCTATGAGCTCCATGTGGCTTTCTTATTTGAATTACAGGATATTGAACTTCACGTGGGCCCAGTTTATGCTTTTCAGGAGCATATTCCTTTTGATAGGGTTTTGTATTTTCAAAGCTGTACAAAC

Fln Alignment:

sp_v1.1_unigene15331___MNFLALFSSMAAGKDETSASAGEVETVKAEAGAVKTVEANGTDETVKXXXXXXXXXXXXXXXXSSPVIEPQLTSFKEESNFVSDLKESERKALQELKCRIEEAIMKNEFSEHENKKSDGKDGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSDKKAVEEQGPKXXXXXXXXXXXXXXXXLDXXXXXXXXXXXXXXVESXXXXXXXXXXXXXXXXXXXXXXXXXXPDVYLWGVPLLHTKGDERTDVILLKFLRARDFKVQEAFEMLKNTVLWRKSFKTDSILEEDFGNDLDGVAYMNGYDKEGHPVCYNVYGVFQDKELYQKTFGTEEKRQRFLRWRVQLLEKGIQQLSFSPGGVNSMVQITDLKNSPGPGKKELRQATKQALDLLQDNYPEFVARKIFINVPWWYFALSTMISPFITQRTKSKFVIARASKVTETLFKYISPEYVPVQYGGLNRENDQEFSGADGGVTELIIKAGTKQIIDIPATEVGTSLVWDLTVVGWEVSYKEEFIPSAEGCYTVIIQKEKKMAAHEEAVRNSFKIGEAGKVVLTIDNLSSRKKKLIYRSKVKRHL
B8LQX3_______________MNFLALFSSMAAGKDETSASTGEVETVKAEAEVVKTAEANGTGETVKAEVVEAVEANGTGAAESSPVIEPRVTSFKEESNFVSDLKESERKALQELKCRIEEAILKNEFSEHENEKSDVKDGETKETEAEKPADEKEAEKEELKVVETVTEIDVKDGDVVVKNEETEVTVTEELSDKKAVEEQGPKAEESVAVETVTVSSDTLEVSASGAENASEATAVESEAVTGEQETVEVTVETFEAETEKFRATDVYLWGVPLLHTKGDERTDVILLKFLRARDFKVQEAFEMLKNTVLWRKSFKTDSILEEDFGNDLDGVAYMNGYDKEGHPVCYNVYGVFQDKELYQKTFGTEEKRQRFLRWRVQLLEKGIEQLSFSPGGVNSMVQITDLKNSPGPGKKELRQATKQALDLLQDNYPEFVARKIFINVPWWYLALSTMISPFITQRTKSKFVIARASRVTETLFKYISPEYVPVQYGGLNRENDQEFSGADGGVTELIIKAGTKQIIDIPATEVGTSLVWDLTVVGWEVSYKEEFIPSAEGCYTVIIQKEKKMAAQEEAVRNSFKIGEVGKVVLTIDNLSSRKKKLIYRSKVKRHL

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
2149	97			2	0.982166
2508			14	85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain