SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15323

Length: 470 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene15323
GTCACGGAGACAAGAAGGACGAGACATGGTGGTACAGCATGGAGAGCGTGGAAGAAGTTGAAAAGGCAATAACAACAATCATATGGGTAGCCTCGGCTCTTCACGCTGCGCTTAATTACGGGCAATACCCTTACGCCGGATACATGCCTGATCGCCCCACCATCAGCAGAAGGTTAATTCCGGAAGAAGGGTCCCAAGAGTTCTCAGAGCTGGTGGAGAATCCGGACTTGGCTATCCTTAGAACTCTAAGTAACAAATTTCAAACCACCCTTGGTATAGCCCTCATAGAAATCCTGTCGAGGCATTCAACAGACGAGGTTTATTTGGGGCAGAGAGCCACGAGTGAATGGAGTGATGATAAACGTGTGACAGAGGCTTTTGAACGTTTCGGAACAAAGTTGAAGGAGATAGAGAAGAATATAACAGAAAGAAACCTGAATGCAGAAATATTGAAGAACAGGTCTGGTCCG

Ace file of the UniGene sp_v1.1_unigene15323 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Lipoxygenase 1 n=12 Tax=Solanum RepID=LOX1_SOLTU	-	-	60%
FL-Next	sp=Lipoxygenase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	55%
Blast2go	lipoxygenase	-	-	77%

Source	ECs	Term	Type	e value	Identity
Blast2go	Lipoxygenase.	EC:1.13.11.12	-	0.0	77%

Source	KEGGs	Term	Identity
Blast2go	Linoleic acid metabolism	00591	77%
Blast2go	alpha-Linolenic acid metabolism	00592	77%
Blast2go	Biosynthesis of plant hormones	01070	77%
Blast2go	Metabolic pathways	01100	77%

Source	GOs	Term	Type	Identity
Blast2go	oxylipin biosynthetic process	GO:0031408	Biological Process	77%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	77%
Blast2go	iron ion binding	GO:0005506	Molecular Function	77%
Blast2go	lipoxygenase activity	GO:0016165	Molecular Function	77%
Blast2go	cytoplasm	GO:0005737	Cellular Component	77%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Lipoxygenase	IPR000907	-	0.0	77%
Blast2go	Lipoxygenase, C-terminal	IPR013819	-	0.0	77%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLK5

Fln msg: Distance to subject end: 32 aas, your sequence is shorter than subject: 156 - 930

Fln protein: HGDKKDETWWYSMESVEEVEKAITTIIWVASALHAALNYGQYPYAGYMPDRPTISRRLIPEEGSQEFSELVENPDLAILRTLSNKFQTTLGIALIEILSRHSTDEVYLGQRATSEWSDDKRVTEAFERFGTKLKEIEKNITERNLNAEILKNRSGP

Protein Length: 157

Fln nts: GTCACGGAGACAAGAAGGACGAGACATGGTGGTACAGCATGGAGAGCGTGGAAGAAGTTGAAAAGGCAATAACAACAATCATATGGGTAGCCTCGGCTCTTCACGCTGCGCTTAATTACGGGCAATACCCTTACGCCGGATACATGCCTGATCGCCCCACCATCAGCAGAAGGTTAATTCCGGAAGAAGGGTCCCAAGAGTTCTCAGAGCTGGTGGAGAATCCGGACTTGGCTATCCTTAGAACTCTAAGTAACAAATTTCAAACCACCCTTGGTATAGCCCTCATAGAAATCCTGTCGAGGCATTCAACAGACGAGGTTTATTTGGGGCAGAGAGCCACGAGTGAATGGAGTGATGATAAACGTGTGACAGAGGCTTTTGAACGTTTCGGAACAAAGTTGAAGGAGATAGAGAAGAATATAACAGAAAGAAACCTGAATGCAGAAATATTGAAGAACAGGTCTGGTCCG

Fln Alignment:

sp_v1.1_unigene15323___HGDKKDE-TWWYSMESVEEVEKAITTIIWVASALHAALNYGQYPYAGYMPDRPTISRRLIPEEGSQEFSELVENPDLAILRTLSNKFQTTLGIALIEILSRHSTDEVYLGQ--RATSEWSDDKRVTEAFERFGTKLKEIEKNITERNLNAEILKNRSGP
B8LLK5_______________HGDLKDDPSRWYKMETKEEVVEAVTTIIWIASAHHAAVNFGQYSYGGYMPNLPTMSRRLIPEKGSEEYSEMLRDVDAYFLRTVSTPRQATLIMAVLEILSQHAKHEVYIGQIHGSTPDWVDDSGVEEAFNRFSSRLVQLEKNVIDRNNNPN-LKNRHGP

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
180		11		88	0.923564
199	88	11			0.923564
201			88	11	0.923564
215			12	87	0.992554
216			12	87	0.992554
247		85		14	0.993533
257	75			25	0.996473
274		25		75	0.996473
289	25	75			0.996473
292	75			25	0.996473
294		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain