SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15320

Length: 1256 nt

Origin of reads: Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene15320

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	MBD905; methyl binding domain protein	-	-	1.0e-18	35%
FL-Next	sp=Methyl-CpG-binding domain-containing protein 5; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	29%
Blast2go	methyl binding domain protein	-	-	1.04452e-18	52%

Source	GOs	Term	Type	e value	Identity
Blast2go	DNA binding	GO:0003677	Molecular Function	1.04452e-18	52%
Blast2go	intracellular organelle	GO:0043229	Cellular Component	1.04452e-18	52%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Methyl-CpG DNA binding	IPR001739	-	1.04452e-18	52%
Blast2go	DNA-binding, integrase-type	IPR016177	-	1.04452e-18	52%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9SNC0

Fln msg: your sequence is longer than subject: 257 - 182

Fln protein: MKLGGMPKDVSLDRASGSGSHKKRRPSSRYQRAITVIESPDWLPKGWITELRTRETGASAGTTDKYFFDPVSDHRFRSKKDVFKFVETGYVRGLSSKRKNEDPDGKTSAENKSSNTAGVHASKRPTKVRWVLNSSEGSWVPFIDEEEMNGSNLKEGELIFDLDSNANTCGEEQLKTALFENVCPSKGPTKESIEGEIDLNKKRDDSPIVSPFGDFWRDPCLEFAVKTLTGAIPVVDDDLVLQGCPSELFFTSSETK*

Protein Length: 258

Fln nts: GCTGTATATTAGCTTAGTAAAGCAGATCAGGCATAGGGAAAAGAAAAGGAAAATTCGAACCTGTTTTTGTTTCTAATGAATCTCCCATTTGGCAAATTTGTAATTGCGGTAGCAAAAATGGAGGAGAAATGGGAATTGGAATTCAGGGGCAATAAAGGGTGGAAATACGAGGTGGTGGAGTGCGTGCAGGTGGCAGTCTTACGTGCAGTTGGCTCTGTGTTGGCCGCCTGTAACTTGTGAAAAGCTTTCATAGCATAATGTCTCTACATAATCGTCCCTTTACAGGAATCCTTCCGAGGGGGAGTCTCTAGACCTGGGTATGAAAAT_-_ATGAAATTGGGTGGGATGCCTAAAGATGTTTCACTGGATCGAGCTTCGGGATCGGGCTCCCATAAGAAGCGTCGTCCCAGTAGCAGGTACCAGAGAGCTATTACAGTGATTGAATCTCCAGATTGGCTACCGAAAGGATGGATCACTGAACTCAGAACTAGAGAGACTGGTGCCAGTGCTGGAACCACAGACAAGTATTTTTTTGATCCTGTGTCAGACCATAGATTTCGATCTAAGAAAGACGTGTTTAAGTTTGTGGAAACTGGATATGTCAGAGGGCTTAGTTCAAAGCGGAAGAATGAAGACCCTGATGGTAAAACTTCAGCAGAGAACAAAAGCAGTAATACAGCGGGAGTGCATGCTAGTAAGAGACCTACTAAGGTTAGATGGGTTCTAAATAGTTCAGAAGGATCCTGGGTACCTTTTATAGATGAAGAGGAGATGAATGGATCAAACCTGAAGGAAGGGGAGCTGATTTTTGACCTCGATAGCAATGCAAACACATGTGGTGAAGAACAATTGAAAACTGCTCTTTTTGAGAATGTTTGTCCTTCTAAAGGACCAACAAAAGAAAGCATTGAAGGAGAAATTGATTTGAACAAAAAAAGGGATGACTCACCAATTGTCTCACCCTTTGGAGATTTCTGGCGAGATCCTTGTCTGGAATTTGCTGTCAAAACTTTGACAGGAGCAATTCCTGTTGTAGATGATGATTTGGTCCTTCAGGGATGTCCTTCAGAATTATTTTTCACCTCAAGTGAAACCAAATGA___AAATCTGTGTAGTAATTCAAATCTCTCTGATCCATTAGGTTCTGTCGCTCTTGCAGATGGCTCTGGCGGCAATAAGCATTCTGAGCATCCTAATTCAGCTGAAGAAAAGGCCTCATCATCCATGGTGGAGTTTAATAGAAGTAATGTGAATCAACACA

Fln Alignment:

sp_v1.1_unigene15320___DWLPKGWITELRTRETGASAGTTDKYFFDPVSDHRFRSKKDVFKFVETGYVRGLSSKRKNEDPDGKTSAENKSSNTAGVHASKR----------------PTKVRWV-LNSSEGSWVPFIDEEEMNGSNLKEGELIFDLDSNAN
Q9SNC0_______________NWLPPDWRTEIRVRTSGTKAGTVDKFYYEPITGRKFRSKNEVLYYLEHGTPKKKSVKTAENGDSHSEHSEGRGSARRQTKSNKKVTEPPPKPLNFDFLNVPEKVTWTGINGSEEAWLPFIGDYKIQESVSQDWDRVFTLVTSQN

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
536	12			87	0.992554
687		16	66		0.999991
689			90	10	0.90298
690	70	10		20	0.999998
691			80	20	0.999996
692		20		80	0.999996
697		10	90		0.90298
698		80		20	0.999996
699			20	80	0.999996
700	90			10	0.90298
702			10	90	0.90298
703	70	10	20		0.999998
704	90			10	0.90298
705		20	80		0.999996
706	90			10	0.90298
707		10	90		0.90298
708	80		20		0.999996
715	88		11		0.923564
727	11		88		0.923564
792		40	60		1.0
1066	33			66	0.997452
1149		33		66	0.997452
1151		66	33		0.997452
1153		33	66		0.997452
1154	33			66	0.997452
1156			66	33	0.997452
1158	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain