SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15310

Length: 917 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene15310

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	senescence-associated protein 12	-	-	41%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	83%
Blast2go	protein	-	-	63%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Senescence/spartin-associated	IPR009686	-	0.0	63%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NV63

Fln msg: your sequence is shorter than subject: 281 - 443

Fln protein: RVWIGLLDSFLQQHACLSLPAESTGGAAPKSTRSAKGGSKENWEAAYWTELAPRVEDYNTAVGKAIAAGSGKIIKGLFLCTNAYSSQVQSGGESVRSRVTKAESKTAATADYQKKTSPQVKISRTKRNIRRAKRLSRMTEKLSENVLAGIVTGSGAVTAPVVGSKAGQKFFSTSPGDVLLASLDAFNKVLDAAEIVGKDALSAASEATVEIVANRFGEEAGEVTHDTFAVAGHGIGTAWNVIKVPEAINPASNGTISASALKALKLKKASKAVTSASKCK*

Protein Length: 282

Fln nts: GAGGGTTTGGATTGGATTGCTGGACAGTTTCCTGCAGCAACACGCATGTCTGTCATTACCCGCAGAATCGACAGGCGGTGCGGCGCCAAAATCCACAAGATCAGCGAAGGGCGGTTCGAAAGAAAactgGGAGGCTGCGTACTGGACTGAATTGGCGCCGAGGGTGGAAGATTATAACACTGCCGTGGGCAAGGCCATTGCTGCTGGTTCGGGGAAGATTATCAAGGGTTTATTCCTCTGCACCAATGCTTATTCTTCTCAGGTACAGAGCGGCGGAGAATCTGTGAGAAGCCGAGTAACGAAAGCCGAGAGCAAAACGGCCGCAACAGCCGATTATCAAAAGAAAACGAGTCCTCAAGTGAAGATCAGTCGCACAAAGAGAAATATTCGAAGGGCGAAAAGGCTGTCAAGGATGACAGAAAAACTAAGCGAGAATGTGCTGGCTGGGATTGTCACAGGAAGCGGTGCCGTGACTGCTCCGGTTGTCGGCTCCAAGGCTGGCCAGAAGTTCTTTAGCACGTCACCTGGAGATGTCCTTCTTGCTTCCTTGGATGCTTTCAACAAAGTTTTGGACGCTGCAGAAATAGTTGGAAAGGATGCTCTGTCAGCTGCTTCCGAGGCTACAGTTGAAATTGTTGCAAACAGGTTTGGGGAGGAAGCAGGAGAGGTGACACATGACACATTTGCTGTGGCTGGGCATGGCATTGGAACTGCGTGGAACGTCATAAAGGTCCCGGAGGCCATCAATCCGGCATCAAATGGAACAATATCAGCATCTGCTTTGAAGGCTTTGAAGTTGAAGAAGGCCAGCAAAGCAGTCACTAGTGCATCCAAATGCAAATGA___TTGTATATATAGCATCTTGCTGGAACTCCTTTGCTACTCTACAGATTTTGTTTTAGATTCTCCCAGCAGTAAT

Fln Alignment:

sp_v1.1_unigene15310___LDSFLQQHACLSLPAESTGGAAPKSTRSAKGGS--KENWEAAYWTELAPRVEDYNTAVGKAIAAGSGKIIKGLFLCTNAYSSQVQSGGESVRSRVTKAESKTAATADYQKKTSPQVKIS-RTKRNIRRAKRLSRMTEKLSENVLAGIVTGSGAVTAPVVGSKAGQKFFSTSPGDVLLASLDAFNKVLDAAEIVGKDALSAASEATVEIVANRFGEEAGEVTHDTFAVAGHGIGTAWNVIKVPEAINPASNGTI
A9NV63_______________LDSFLQQHACLSLPAESTGGAS-KSTRATKWGSCDRENPEAAYWTALAPRVENYNSVVAKAIAAGSGQIIKGLFLCTNAYDSQLQKGGESVRGRVTKAESKTGAAADHQKKTSSHAKISPSTKRNIRRAKKLSRMTEKLSENLLAGVVTVSGGVTAPVVGSKAGQKFFRMLPGDVLLASLDAFNKVLDAAEIVGRDALSAASEATVEIVANRFGEEAGEVTHDTFAVAGHAIGTAWNVTKVRKAINPVSNGTI

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
582	10		90		0.90298
587	90			10	0.90298
674	90	10			0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain