SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15300

Length: 1118 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene15300 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Small heat stress protein class CIII n=1 Tax=Solanum peruvianum RepID=Q94EN7_SOLPE	-	-	4.0e-31	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Blast2go	protein	-	-	0.0	67%

Source	GOs	Term	Type	Identity
Blast2go	response to heat	GO:0009408	Biological Process	67%
Blast2go	response to high light intensity	GO:0009644	Biological Process	67%
Blast2go	response to hydrogen peroxide	GO:0042542	Biological Process	67%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Heat shock protein Hsp20	IPR002068	-	0.0	67%
Blast2go	HSP20-like chaperone	IPR008978	-	0.0	67%

Full-Lengther Next Prediction

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
702	10	2		88	1.0
704	4	2	93		0.970804
708	10		2	87	1.0
709	2			89	1.0
711		8	91		1.0
712		8		91	1.0
717	2	89		8	1.0
719	8	88	2		1.0
720		11	88		1.0
747	5	5		89	0.979359
748	5	2	2	89	0.979359
751	2	2	89	5	0.979359
755		5	2	91	0.99441
758			5	94	0.998744
760		5		94	0.998894
761		5	94		0.998894
823	6	93			0.999453
838		8		92	0.999718
875		75		25	1.0
994	4	12	83		1.0
995	83	12			1.0
998	86	13			0.999973
999	6	13	60	20	1.0
1002		77		22	0.999999
1003	11	88			0.923564
1004	11	88			0.923564
1005		66	33		1.0
1006	88		11		0.923564
1008		33		66	0.997452
1009	33			66	0.997452
1011		66	33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain