SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15298

Length: 1174 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene15298

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	similar to EMB2394 (EMBRYO DEFECTIVE 2394); structural constituent of ribosome; K02933 large subunit ribosomal protein L6	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	50s ribosomal protein l6	-	-	78%

Source	ECs	Term	Type	e value	Identity
Blast2go	Protein-synthesizing GTPase.	EC:3.6.5.3	-	0.0	78%

Source	GOs	Term	Type	Identity
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	78%
Blast2go	translation	GO:0006412	Biological Process	78%
Blast2go	structural constituent of ribosome	GO:0003735	Molecular Function	78%
Blast2go	rRNA binding	GO:0019843	Molecular Function	78%
Blast2go	large ribosomal subunit	GO:0015934	Cellular Component	78%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	78%
Blast2go	membrane	GO:0016020	Cellular Component	78%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NKY9

Fln msg:

Fln protein: MATASFSVPSLACALRSTFLGEDNGLKVARARPAIAVVRLPTVRPIIECKESRIGKKPVPVPANVNITLEGQHIRVNGTLGELSQTYPNEIKVDWDASGCLKISKAVETRRANQMHGLFRTLTDNMVIGVSKGFEKKLQLVGVGYRATVEGNDLVMNLGFSHPVRLTVPDGIKVTVEGNTNVTVSGRDKCAIGLFAADIRKWRPPEPYKGKGIKYADEIVRRKEGKAGKKK*

Protein Length: 233

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCTATACGTTGTAAGGGTTCGCTGTCAGGCTGTAGTCACTCCACTGGGCTCTTCATACTTATCACCAAACCACAACGATTCTCTTTATCAACAAAGGCAGATAAGCAGGAGCAAGTTGACCAA_-_ATGGCCACTGCGAGCTTCAGCGTGCCATCCCTCGCCTGTGCCCTGAGAAGCACCTTCTTGGGGGAAGACAATGGCCTAAAGGTTGCCAGGGCTAGACCTGCAATTGCCGTTGTGAGATTGCCTACCGTGAGGCCAATTATTGAATGCAAAGAATCCAGAATTGGTAAAAAGCCTGTGCCGGTACCAGCGAATGTGAATATCACATTAGAAGGGCAGCATATTAGAGTGAATGGTACACTCGGGGAGCTCTCTCAGACATACCCGAATGAGATTAAGGTGGATTGGGACGCTTCTGGCTGTCTGAAAATTTCCAAAGCTGTTGAGACGAGGAGAGCCAATCAGATGCATGGACTCTTTCGCACTCTTACCGACAACATGGTCATCGGGGTATCAAAAGGCTTTGAGAAGAAACTCCAGCTAGTTGGAGTTGGTTACCGTGCTACTGTAGAAGGAAACGACTTAGTTATGAATTTGGGATTTTCACATCCCGTTCGTTTAACAGTTCCAGATGGCATTAAAGTGACGGTTGAAGGAAACACCAACGTCACTGTATCAGGAAGAGATAAATGTGCTATTGGACTATTTGCAGCCGACATAAGAAAATGGCGACCCCCAGAGCCATACAAGGGAAAGGGTATCAAGTATGCTGATGAGATAGTAAGGAGAAAGGAGGGTAAAGCTGGGAAGAAAAAGTAA___GCTCTGGTTTTCTGTCAATAGTTTTTTTTGTTATTTTGGAAATTGAGATACTTTCCTGGATCCATACAAGGAAAAGGGTACGAAGTATGCTGATGAAGACTGTAAGCTGGAAAGAAGTAAGGCTTTTAATGTTGCATTGGCATTTTATGTTGGGAAATTTATCAATCTACCTACATGGTAGGGAACTTGGTAGCAGTTCTTGGATTATAATTTTATATCATCTACCCTTAAATCGCATTGGCACCAAATTTTGCAAGAAAGAACACAAGTGGAGATGTATTTCTCATTTTTGCCTGTGTATTAATTTTGTTTTTGATGCCATGCAAAAAC

Fln Alignment:

sp_v1.1_unigene15298___MATASFSVPSLACALRSTFLGEDNGLKXXXXXXXXXXXXLPTVRPIIECKESRIGKKPVPVPANVNITLEGQHIRVNGTLGELSQTYPNEIKVDWDASGCLKISKAVETRRANQMHGLFRTLTDNMVIGVSKGFEKKLQLVGVGYRATVEGNDLVMNLGFSHPVRLTVPDGIKVTVEGNTNVTVSGRDKCAIGLFAADIRKWRPPEPYKGKGIKYADEIVRR
A9NKY9_______________MATASFIVPSLACALRSTLLGEDNGLKAARDRPAIAIVKLPSVRPTIECKESRIGKKPVVVPANVNITLEGQHIRVNGLLGELSQTYPNEIKVERDPSGFIKISKAVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAAVEGSDLVMNLGFSHPVRLAVPAGIKVTVEANTSITVSGRDKSVVGQFAADIRKWRPPEPYKGKGIKYADEVIRR

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
591	4	95			0.995482
593	93		6		0.999998
594		93	4		0.976545
595			4	95	0.995482
667			3	96	0.988113
668	96		3		0.988113
669	96	3			0.988113
832	6			93	0.999364
1077	89		10		0.999919

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain