SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15297

Length: 963 nt

Origin of reads: Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene15297 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Class II chitinase 2-1 n=1 Tax=Pseudotsuga menziesii RepID=D7P704_PSEMZ	-	-	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	class ii chitinase 2-1	-	-	82%

Source	ECs	Term	Type	e value	Identity
Blast2go	Chitinase.	EC:3.2.1.14	-	0.0	82%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Amino sugar and nucleotide sugar metabolism	00520		0.0	82%

Source	GOs	Term	Type	Identity
Blast2go	cell wall macromolecule catabolic process	GO:0016998	Biological Process	82%
Blast2go	chitin catabolic process	GO:0006032	Biological Process	82%
Blast2go	chitinase activity	GO:0004568	Molecular Function	82%
Blast2go	chitin binding	GO:0008061	Molecular Function	82%

Source	InterPros	Term	Type	Identity
Blast2go	Glycoside hydrolase, family 19, catalytic	IPR000726	-	82%
Blast2go	Glycoside hydrolase, family 19	IPR016283	-	82%
Blast2go	Lysozyme-like domain	IPR023346	-	82%

Full-Lengther Next Prediction

SNPs (tot: 44)

Position	A %	C %	G %	T %	Probability
494	46			53	1.0
506	76		23		1.0
515		40		60	1.0
520		40		60	1.0
536	10	90			0.90298
540	10			90	0.90298
541		10		90	0.90298
542	10		90		0.90298
543		40	60		1.0
544		10		90	0.90298
545		10	90		0.90298
555	42			57	1.0
557			64	35	1.0
608	66		33		1.0
616	16	83			0.999991
619	83			16	0.999991
644	50		50		1.0
674	83	16			0.994512
675		16	83		0.994512
676	83	16			0.994512
678	83			16	0.994512
706		34		65	1.0
731	34		65		1.0
786		65		34	1.0
802			91	8	0.999807
842	50		50		1.0
852	10	90			0.999898
853			10	90	0.999898
855		90	10		0.999898
856	10		90		0.999898
857		10	80	10	0.99967
860	89	10			0.999919
861		10		89	0.999919
862	10		89		0.999919
865			10	89	0.999919
867		15	84		1.0
868	10	78		10	0.999769
870	84		10	5	0.999846
871	10			84	0.999846
872	68	10	21		1.0
874			5	84	0.999846
928			90	10	0.90298
929	90		10		0.90298
931	90		10		0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain