SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15293

Length: 1640 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene15293

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	HHP4; HHP4 (heptahelical protein 4); receptor	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	protein	-	-	76%

Source	GOs	Term	Type	Identity
Blast2go	response to hormone stimulus	GO:0009725	Biological Process	76%
Blast2go	response to sucrose stimulus	GO:0009744	Biological Process	76%
Blast2go	receptor activity	GO:0004872	Molecular Function	76%
Blast2go	integral to membrane	GO:0016021	Cellular Component	76%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Hly-III-related	IPR004254	-	0.0	76%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NP50

Fln msg:

Fln protein: MAEKDQRRMVDFSALPDYMRDNEYILRYYRAERPLKHTLLSIFSIHNETLNVWTHLVGFVLFLCLTIYTATKLPSVADLPVPNKANLHKLQNEIRAWPMYLPNMAELQAELRTSLPNWVGNCIPGNFSQSNQTEHCILQIIKDDVTNMVFPHSQRPITRWPFLVFLGAATYCLFASATFHLLSCHSKRLYYIMLRLDYSGIVALIAASFYPPVYYSFMCAPFFRKIYLTAITLLGIATILVSLLPAFQSPEFRTLRAILFSGMGVWGVAPVVHKLILYKGEPEALHTTAYEIGMGCFYVLGALVYATRIPERWKPGKFDIAGHSHQLFHILVIAGAYTHYQAGLLYLKWRDLKGC*

Protein Length: 357

Fln nts: CGTCGTGACCTTGGCTGTCACTCCCATAAAAAATGTACAGCCGGACTGCGACTAGCACCTAACGTTCAATTTGGAAGATTCGCATCGCTTCGCGTAACATTCCCTAGTCGGTGTAAAGTGGTCCAACTGGCCAGATATTATAAAAAGCAAAGCAGGAAAGCTTCATCATACACAAGCCAGGTGTGAAACCACTAACCCATGTTATGCCTGCAAACATTTGAAAAGGAGGCTTCCGTTTCATTTTAATTCCCTCCTCTCCATCCGTTCATTCGTATTCTGCTCCCACAACCAGTCAGGCCAGGCGGACAACCGAGTGAGGTCTGATA_-_ATGGCCGAGAAGGACCAGCGCCGAATGGTGGACTTCTCGGCATTGCCAGATTACATGCGAGACAACGAGTACATCCTCCGATATTACAGAGCCGAACGTCCTCTCAAGCATACCCTTCTCAGCATTTTCAGCATTCACAACGAAACGCTTAATGTCTGGACACATTTGGTGGGTTTTGTGCTTTTCCTCTGCCTCACAATATACACAGCGACCAAGCTTCCTAGTGTGGCGGATCTGCCTGTTCCCAACAAGGCCAATCTTCACAAACTGCAGAACGAGATCAGGGCATGGCCCATGTATCTACCAAATATGGCGGAACTGCAGGCAGAATTGAGGACGTCTTTGCCTAACTGGGTTGGCAATTGTATTCCAGGAAACTTCTCACAATCCAATCAAACCGAGCATTGCATACTTCAAATCATAAAGGACGACGTCACGAACATGGTATTTCCCCATTCACAGAGACCAATAACTCGGTGGCCTTTCTTAGTGTTCCTCGGAGCTGCAACATATTGCCTTTTTGCCAGTGCCACTTTCCACTTGCTCTCATGCCACTCGAAGAGACTTTACTACATTATGTTAAGACTTGATTATTCAGGAATTGTGGCCTTGATAGCTGCATCTTTTTATCCTCCTGTCTACTATTCGTTCATGTGTGCTCCTTTCTTTAGAAAAATATACTTGACTGCAATCACTTTGCTTGGGATTGCAACCATTCTCGTGTCTCTGTTGCCTGCTTTTCAGAGTCCTGAATTCAGAACATTGAGGGCCATATTATTTTCTGGGATGGGCGTTTGGGGTGTGGCTCCTGTGGTGCATAAGCTCATACTATATAAGGGTGAACCTGAAGCACTTCACACAACTGCTTATGAGATTGGCATGGGTTGTTTCTATGTTCTTGGAGCATTGGTGTATGCAACCAGGATCCCTGAGAGATGGAAGCCTGGAAAGTTTGATATCGCTGGGCACAGCCATCAGCTGTTCCATATTCTTGTAATTGCAGGAGCTTACACGCACTACCAAGCTGGTTTGTTGTATCTTAAATGGCGTGATTTGAAGGGATGTTAG___AGCAACTCATTTGTTTGCTGAACACTGCCGCCATATGGCATTTTATTCTATAGCTGTACATGTTATTCCATAGATCTATGGGTGTATTCATTCTAATTCTTACCCTATGTTGAAGATGGAGGCATGTTAAGTAATTGTTAATGATGTTTATAAGGGATGAGTTGTATTTTTAGACAATGGATTTATTAAGTGTTTGATCGAGGTTATTTTGTATTTGGCTAATAGTATTATTACTAATTGCAACCC

Fln Alignment:

sp_v1.1_unigene15293___MAEKDQRRMVDFSALPDYMRDNEYILRYYRAERPLKHTLLSIFSIHNETLNVWTHLVGFVLFLCLTIYTATKLPSVADLPVPNKANLHKLQNEIRAWPMYLPNMAELQAELRTSLPNWVGNCIPGNFSQSNQTEHCILQIIKDDVTNMVFPHSQRPITRWPFLVFLGAATYCLFASATFHLLSCHSKRLYYIMLRLDYSGIVALIAASFYPPVYYSFMCAPFFRKIYLTAITLLGIATILVSLLPAFQSPEFRTLRAILFSGMGVWGVAPVVHKLILYKGEPEALHTTAYEIGMGCFYVLGALVYATRIPERWKPGKFDIAGHSHQLFHILVIAGAYTHYQAGLLYLKWRDLKGC
A9NP50_______________MAEKDERRMVDFSALPDYMRDNEYILRHYRAECPLKHTLLSIFTIHNETLNVWTHLAGFVLFLCLTIYTATKLPNVADLPVPNKANLYRLQNEIRAWPMYLPNMAELQAELRTSLPNWVGNCIPGNFSYSNQTEHCILQTIKEDVTNMVFPHSQRPITRWPFLVFLGAATYCLFASATFHLLSCHSKRLYYIMLRLDYSGIVALIAASFYPPVYYSFMCAPFFRKLYLTAITLLGIATVFVSLLPAFQNPEFRTLRATLFSGMGVWGVAPVVHKLILHKGEPEALHTAAYEIGMGCFYVLGALLYATRIPERWKPGKFDIAGHSHQLFHILVIAGAYTHYQAGLLYLKWRDLKGC

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
179		66		33	0.997452
182			66	33	0.997452
529	90		10		0.90298
549		10		90	0.90298
1053	20		80		0.995493
1098		25		75	0.996473
1624		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain