SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15289

Length: 2096 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene15289
CGTCGTGACCTTGGCTGTCACTCAATCCTCAAGTTGTTCATGGTTTTTTTGGTTTGGGGTTCTGAATTCATAGAAGCTTAAGGTCTCTGTAAGACTGTGAATCCATTCTCAGTTAAAAGTTCAGCTGTTATAGCTTCACTGCATAGGGATTTTGCGTATCTGAAGGCTAGTAAGGCCAAATTTCTGCAACTGCAACTCTGTTTTCTCAGTTTTTCACAAAACATAAGAACTGAAAACTTGGACTGAATCCATAGTGTTGATTTATAGCAATGGAGGGAACAATACTGCCATGCAGACGATCCCATGAGGATGATGGGGCCGAATTCTCCAAGAAACACAAAGCTATGAAGAAATGGGTTGATCCAGCCCAAGGCCTGGCTAATGCCCGCCATGAGTTTGGCGAGCATGGAGGTGTGAACATGTCCATAGAAGCCTCGGCTACCTTTACAGTTATGGAGCCTGAGACCATGAGAAGGATGTTCAGTGGGGAGCTTGGCCCAGAACGTGATTTCTTCATATACAGCAGGCATTTCAATCCTACTGTTCTCAATTTGGGCAGGCAGATGGCTGCTTTGGAGGGGACTGAAGCTGCCTACTGTACTTCCAGTGGTATGTCTGCAATATCTTCTGTTTTATTACAGTTGTGTAGCCATGGAGACCATGTTGTGGCCTCTAGGTGTCTGTATGGAGGCACCCATGCATTGTTGGCACATTTTCTGCCAAGGGCCTGTGGGGTTTCAACATCTTTTGTTGATATCCAGAGGCTTGATGATGTGAAAAATGCCATAACACCGTCTACCAAGGTTTTGTATTTTGAATCTGTCTCAAATCCAACTCTGGCAGTTGCAGACATCCCATCTCTGTCTGCCATTGCTCACGAGAAAAATGTCAAGGTGGTGGTTGATAATACCTTTTCTCCCATGATCATATCCCCTGCAAAGCTTGGTGCTGATGTTGTTATTCACAGCATTTCAAAATATATCAGTGGAGGTGCTGATGTTATAGCAGGAGCAATATGTGGGCCTGCAGATCTGATAAATTCCATGATGGATCTCCATCAGGGAACCTTGATGCTCTTGGGGCCAACCATGAATGCAAAAGTGGCATTTGAGATCTCTGAGAGGCTCCCCCACTTGGGATTGAGGATGAAGGAGCACTGTCACAGAGCATATACCTATGCAAGCAGGATGAAGAAATTGGGAATGAAAGTTATATATCCTGGCCTAGAAGATCACCCTCAGTATGCCCTTTTGAAGACCATTGTTAACAGTGGGTATGGTTATGGTGGGATTCTGTGTGTGGACATGGAGACTGAGGAGAGGGCCAACAAGCTCATGAACCACCTGCAGAATCATACCCAGTTTGGGCTGATGGCGGTGAGCTTGGGGTACTATGAAACGTTGATGTCATGCTCTGGCAGCAGCACTAGCAGTGAGATGAATGAGGAGGAAAAGGATTTGGCTGGGATCTCGCCAGGTCTGATAAGGATGTCGATTGGTTACAGTGGGACTCTTGAGCAGAGATGGAGCCAATTTGAGGATGCCCTCTCCAGGATGTCTCAAGTCCTGCCTTTTTAAACGCTGGGATTGATGCAGATCCAACACTTCGTTTTCTATTTATTATCATAGCTAGTCTGTAAGAGGTGTACTGTAACACTTCTATGTTTTTTATATGCATATATGTATTTCTTCCCCTGATCTGCTATGCTGGAACTACAGATTGCATGCAACTGTTGAAAAATGGTGTGATAATTGCAAGACATAATTTGTCTATTTGAAAGACGGTGTGATAATTGCACGACCTAATTTGGCTTTTTAAAAATCTCTGTACAAATCTGATCAGTCAGAGTGGGCACAAATCTGCTATCTCAGAGAGAAGGTACAGAGGAAAATGTGTTGTGGATGGAAATATAAGTAATAGCTGGCATTGTATCATGATATATTTGATCCCAACGATCCCATTTTTAGAAAGTTCAATGCTGAAGCATATTATATGTGCTGATATAAGTTTTTTATTGGTTTGTTTCTGGAATTTGATTTTTGAATATTTACTTTGTGATTCCTGAACATACTGAATAATATCTTTTTACATTTCGT

Ace file of the UniGene sp_v1.1_unigene15289

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cystathionine gamma-synthase, putative n=1 Tax=Ricinus communis RepID=B9RYU1_RICCO	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	protein	-	-	84%

Source	ECs	Term	Type	e value	Identity
Blast2go	Cystathionine gamma-synthase.	EC:2.5.1.48	-	0.0	84%

Source	KEGGs	Term	Type	Identity
Blast2go	Cysteine and methionine metabolism	00270		84%
Blast2go	Selenocompound metabolism	00450		84%
Blast2go	Sulfur metabolism	00920		84%
Blast2go	Biosynthesis of plant hormones	01070		84%
Blast2go	Metabolic pathways	01100		84%
Blast2go	Biosynthesis of secondary metabolites	01110		84%
Blast2go	Methionine gamma-lyase.	EC:4.4.1.11	-	84%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Cysteine and methionine metabolism	00270		0.0	84%
Blast2go	Selenocompound metabolism	00450		0.0	84%

Source	GOs	Term	Type	Identity
Blast2go	methionine catabolic process via 2-oxobutanoate	GO:0019458	Biological Process	84%
Blast2go	pyridoxal phosphate binding	GO:0030170	Molecular Function	84%
Blast2go	cystathionine gamma-synthase activity	GO:0003962	Molecular Function	84%
Blast2go	methionine gamma-lyase activity	GO:0018826	Molecular Function	84%
Blast2go	cytosol	GO:0005829	Cellular Component	84%

Source	InterPros	Term	Type	Identity
Blast2go	Cys/Met metabolism, pyridoxal phosphate-dependent enzyme	IPR000277	-	84%
Blast2go	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	84%
Blast2go	Pyridoxal phosphate-dependent transferase, major region, subdomain 2	IPR015422	-	84%
Blast2go	Pyridoxal phosphate-dependent transferase, major domain	IPR015424	-	84%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P2J0

Fln msg:

Fln protein: MEGTILPCRRSHEDDGAEFSKKHKAMKKWVDPAQGLANARHEFGEHGGVNMSIEASATFTVMEPETMRRMFSGELGPERDFFIYSRHFNPTVLNLGRQMAALEGTEAAYCTSSGMSAISSVLLQLCSHGDHVVASRCLYGGTHALLAHFLPRACGVSTSFVDIQRLDDVKNAITPSTKVLYFESVSNPTLAVADIPSLSAIAHEKNVKVVVDNTFSPMIISPAKLGADVVIHSISKYISGGADVIAGAICGPADLINSMMDLHQGTLMLLGPTMNAKVAFEISERLPHLGLRMKEHCHRAYTYASRMKKLGMKVIYPGLEDHPQYALLKTIVNSGYGYGGILCVDMETEERANKLMNHLQNHTQFGLMAVSLGYYETLMSCSGSSTSSEMNEEEKDLAGISPGLIRMSIGYSGTLEQRWSQFEDALSRMSQVLPF*

Protein Length: 437

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCCTCAAGTTGTTCATGGTTTTTTTGGTTTGGGGTTCTGAATTCATAGAAGCTTAAGGTCTCTGTAAGACTGTGAATCCATTCTCAGTTAAAAGTTCAGCTGTTATAGCTTCACTGCATAGGGATTTTGCGTATCTGAAGGCTAGTAAGGCCAAATTTCTGCAACTGCAACTCTGTTTTCTCAGTTTTTCACAAAACATAAGAACTGAAAACTTGGACTGAATCCATAGTGTTGATTTATAGCA_-_ATGGAGGGAACAATACTGCCATGCAGACGATCCCATGAGGATGATGGGGCCGAATTCTCCAAGAAACACAAAGCTATGAAGAAATGGGTTGATCCAGCCCAAGGCCTGGCTAATGCCCGCCATGAGTTTGGCGAGCATGGAGGTGTGAACATGTCCATAGAAGCCTCGGCTACCTTTACAGTTATGGAGCCTGAGACCATGAGAAGGATGTTCAGTGGGGAGCTTGGCCCAGAACGTGATTTCTTCATATACAGCAGGCATTTCAATCCTACTGTTCTCAATTTGGGCAGGCAGATGGCTGCTTTGGAGGGGACTGAAGCTGCCTACTGTACTTCCAGTGGTATGTCTGCAATATCTTCTGTTTTATTACAGTTGTGTAGCCATGGAGACCATGTTGTGGCCTCTAGGTGTCTGTATGGAGGCACCCATGCATTGTTGGCACATTTTCTGCCAAGGGCCTGTGGGGTTTCAACATCTTTTGTTGATATCCAGAGGCTTGATGATGTGAAAAATGCCATAACACCGTCTACCAAGGTTTTGTATTTTGAATCTGTCTCAAATCCAACTCTGGCAGTTGCAGACATCCCATCTCTGTCTGCCATTGCTCACGAGAAAAATGTCAAGGTGGTGGTTGATAATACCTTTTCTCCCATGATCATATCCCCTGCAAAGCTTGGTGCTGATGTTGTTATTCACAGCATTTCAAAATATATCAGTGGAGGTGCTGATGTTATAGCAGGAGCAATATGTGGGCCTGCAGATCTGATAAATTCCATGATGGATCTCCATCAGGGAACCTTGATGCTCTTGGGGCCAACCATGAATGCAAAAGTGGCATTTGAGATCTCTGAGAGGCTCCCCCACTTGGGATTGAGGATGAAGGAGCACTGTCACAGAGCATATACCTATGCAAGCAGGATGAAGAAATTGGGAATGAAAGTTATATATCCTGGCCTAGAAGATCACCCTCAGTATGCCCTTTTGAAGACCATTGTTAACAGTGGGTATGGTTATGGTGGGATTCTGTGTGTGGACATGGAGACTGAGGAGAGGGCCAACAAGCTCATGAACCACCTGCAGAATCATACCCAGTTTGGGCTGATGGCGGTGAGCTTGGGGTACTATGAAACGTTGATGTCATGCTCTGGCAGCAGCACTAGCAGTGAGATGAATGAGGAGGAAAAGGATTTGGCTGGGATCTCGCCAGGTCTGATAAGGATGTCGATTGGTTACAGTGGGACTCTTGAGCAGAGATGGAGCCAATTTGAGGATGCCCTCTCCAGGATGTCTCAAGTCCTGCCTTTTTAA___ACGCTGGGATTGATGCAGATCCAACACTTCGTTTTCTATTTATTATCATAGCTAGTCTGTAAGAGGTGTACTGTAACACTTCTATGTTTTTTATATGCATATATGTATTTCTTCCCCTGATCTGCTATGCTGGAACTACAGATTGCATGCAACTGTTGAAAAATGGTGTGATAATTGCAAGACATAATTTGTCTATTTGAAAGACGGTGTGATAATTGCACGACCTAATTTGGCTTTTTAAAAATCTCTGTACAAATCTGATCAGTCAGAGTGGGCACAAATCTGCTATCTCAGAGAGAAGGTACAGAGGAAAATGTGTTGTGGATGGAAATATAAGTAATAGCTGGCATTGTATCATGATATATTTGATCCCAACGATCCCATTTTTAGAAAGTTCAATGCTGAAGCATATTATATGTGCTGATATAAGTTTTTTATTGGTTTGTTTCTGGAATTTGATTTTTGAATATTTACTTTGTGATTCCTGAACATACTGAATAATATCTTTTTACATTTCGT

Fln Alignment:

sp_v1.1_unigene15289___MEGTILPCRRSHEDDGAEFSKKHKAMKKWVDPAQGLANARHEFGEHGGVNMSIEASATFTVMEPETMRRMFSGELGPERDFFIYSRHFNPTVLNLGRQMAALEGTEAAYCTSSGMSAISSVLLQLCSHGDHVVASRCLYGGTHALLAHFLPRACGVSTSFVDIQRLDDVKNAITPSTKVLYFESVSNPTLAVADIPSLSAIAHEKNVKVVVDNTFSPMIISPAKLGADVVIHSISKYISGGADVIAGAICGPADLINSMMDLHQGTLMLLGPTMNAKVAFEISERLPHLGLRMKEHCHRAYTYASRMKKLGMKVIYPGLEDHPQYALLKTIVNSGYGYGGILCVDMETEERANKLMNHLQNHTQFGLMAVSLGYYXXXXXXXXXXXXXXXXXXXKDLAGISPGLIRMSIGYSGTLEQRWSQFEDALSRMSQVLP
A9P2J0_______________MEGSVLPCKRPYEEAYGEFCKKNKVMKKWVDPVQGLANARHEFGEHGGVNMSIEASATFTVMEPETMKKMFSGELGPERDFYIYSRHFNPTVLNLGRQMAALEGTEAAYCTSSGMSAISSVLSQLCNHGDHVVASRCLYGGTHALLAHFLPRACGVSTTFVDIHRLEDVRNAITPSTKVLYFESMSNPTLAVADIPSLSAIAHEKNVKVVVDNTFAPVILSPAKLGADVVIHSISKYISGGADVIAGAICGSANLINSMMDLHQGALMLLGPTMNPKVAFEISERLPHLGLRMKEHCHRSYTYASRMKKMGLKVIYPGLEDHPQYALLKSMVNSGYGYGGMLCVDMESEERANMLMSHLQNYTQFGLMAVSLGYYETLMSCSGSSTSSEMNEEEKELAGISPGLIRMSIGYSGTLEQRWSQFENALTSMTEVLP

SNPs (tot: 77)

Position	A %	C %	G %	T %	Probability
24	66	33			0.997452
25	66		33		0.997452
28		66	33		0.997452
30		66	33		0.997452
32	66	33			0.997452
33		33	66		0.997452
38			33	66	0.997452
43			66	33	0.997452
44		33		66	0.997452
45	33			66	0.997452
46		33		66	0.997452
48		33		66	0.997452
49	33			66	0.997452
385	6	80			0.999961
426	90			10	0.90298
428	90	10			0.90298
430	88	11			0.923564
433		88		11	0.923564
434		88	11		0.923564
435	11			88	0.923564
436		88	11		0.923564
437			88	11	0.923564
439	11	88			0.923564
440		11		88	0.923564
554	37		62		1.0
609	10		90		0.90298
678		11		88	0.923564
694		90		10	0.90298
695		90	10		0.90298
696		90	10		0.90298
697	90		10		0.90298
728		50		50	1.0
794	83		16		0.994512
878		25		75	0.996473
895		25		75	0.996473
1037	80	20			0.995493
1147		16		83	0.994512
1155	16	83			0.994512
1157		83		16	0.994512
1160			14	85	0.993533
1161		85	14		0.993533
1163	14	85			0.993533
1164	85			14	0.993533
1167	14		85		0.993533
1168	14	85			0.993533
1169	85		14		0.993533
1174		83		16	0.994512
1175	16	83			0.994512
1179		16	83		0.994512
1181	83		16		0.994512
1182	83		16		0.994512
1183		66	33		1.0
1223	83	16			0.994512
1397	84		15		0.999986
1436		12	87		0.999964
1442		11		88	0.999937
1444	83			11	0.999887
1445		11	83	5	0.999887
1447	88			11	0.999937
1449	11		83	5	0.999887
1450	83	16			1.0
1451	88	11			0.999937
1452	88			11	0.999937
1453	88			11	0.999937
1456	88	11			0.999937
1458			11	88	0.999937
1460		11	88		0.999937
1461	11		88		0.999937
1464		11	88		0.999937
1493	10	15	73		1.0
1685		8		91	0.999807
1773	10			90	0.90298
1775			10	90	0.90298
1777	90		10		0.90298
1788	22		77		0.999999
1854	80		20		0.995493
1860	20	80			0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain