SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15284

Length: 1677 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene15284

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	TIDP2846; LOC100191298; K07942 ADP-ribosylation factor-like 1	-	-	90%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	100%
Blast2go	adp-ribosylation factor 3	-	-	97%

Source	GOs	Term	Type	Identity
Blast2go	vesicle-mediated transport	GO:0016192	Biological Process	97%
Blast2go	auxin metabolic process	GO:0009850	Biological Process	97%
Blast2go	small GTPase mediated signal transduction	GO:0007264	Biological Process	97%
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	97%
Blast2go	vegetative phase change	GO:0010050	Biological Process	97%
Blast2go	response to auxin stimulus	GO:0009733	Biological Process	97%
Blast2go	abaxial cell fate specification	GO:0010158	Biological Process	97%
Blast2go	protein transport	GO:0015031	Biological Process	97%
Blast2go	protein binding	GO:0005515	Molecular Function	97%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	97%
Blast2go	GTP binding	GO:0005525	Molecular Function	97%
Blast2go	Golgi stack	GO:0005795	Cellular Component	97%
Blast2go	plasma membrane	GO:0005886	Cellular Component	97%

Source	InterPros	Term	Type	Identity
Blast2go	Small GTP-binding protein domain	IPR005225	-	97%
Blast2go	ADP-ribosylation factor	IPR006688	-	97%
Blast2go	Small GTPase superfamily, ARF/SAR type	IPR006689	-	97%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LMU1

Fln msg:

Fln protein: MGMLFSRLFASLFGDKEARILVLGLDNAGKTTILYRLQMGEVVSTVPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAVIYVVDSSDTERLVTAKDEFHSILEEEELKGAVVLIYANKQDLPGALDDAAVTEALELHKIKSRQWAIFKTSAIKGEGLFEGLDWLSNTLKAGGR*

Protein Length: 184

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATGCACAGTCGACGACTCATCAAGACCTTGGCAATTTCCGTCGTCCAACGCCAAAACTGGAAAACGTTGACGGTAGTAAAAATATCGTCGTGACCTTGGCTGTCACTCACGGATTTTGTGAAACTCTGGGAGGGCGATCGACCATCTCCCAGACTGCACAGCAATCTCAAGCTTCGCCATTCATTCTCCGGGGAATCGAACAGGCGATTTGATGATGATCAATTCGTGGCGATAAACCAGCGGATTTACACGCGTGGAATGCAATTAACGGCATCGCCCCCTTCACTGCTAGGGTTAATCGGCTGATCTGCAGCTGTTTTAAAG_-_ATGGGAATGCTGTTTTCCAGACTGTTTGCTTCACTCTTCGGAGACAAGGAGGCTCGCATTCTAGTCCTCGGCCTCGACAATGCCGGGAAAACCACCATTCTCTATCGCCTGCAGATGGGAGAAGTGGTTTCTACAGTTCCAACAATTGGATTTAATGTTGAAACGGTCCAGTATAACAACATCAAGTTTCAAGTGTGGGATTTAGGTGGACAAACTAGTATCAGGCCCTATTGGCGGTGTTATTTCCCAAACACTCAGGCAGTTATCTATGTTGTTGATTCGAGTGATACTGAGAGATTGGTCACAGCCAAAGATGAATTTCATTCTATTTTGGAGGAGGAGGAACTGAAGGGAGCAGTTGTACTCATTTATGCAAACAAACAGGATCTCCCAGGTGCCCTTGACGATGCTGCAGTAACTGAGGCTCTCGAACTGCACAAGATCAAAAGTCGGCAATGGGCTATATTCAAGACTTCAGCAATAAAGGGTGAAGGCTTGTTTGAAGGATTGGATTGGTTAAGCAATACACTTAAAGCTGGCGGGAGATGA___TTTTTAACATGAATTTTCTCAATGGTAGGGACTATCCTAAAATGCGTCCCATGTAACATGAGGATCATATGAGTGTTTAGTGATTACTTGGATTGATCTGCAGGAGAGTTTTCCTAGTTTAATTCAGTTTTTTTAATTTCCTTTCTAAGAGCAGCATGTGATATCATTCTCGTGGAAGATTTTGAAACGCTACCTTGCTATTGAGGGAGATTGACCTATGCTAAACAGTTACATTTTTGCTCCACTTGGATAATGTTGCATTATTGAGTTTCATTGTTACTCTCGTGTTCTCCCGGCAAGGGCACTTTTTCAAGAAAATTCGGACGTTGATTTCGTCTCTGTTCAGTATCTTTCCATGTAGAGCTCTGTTTTTTCAAATTTCTATTGAATGTATGGACACAATATAGTTGAAGGGAGCATTTTCTCGAGATTCTGGTTTCTATCCAAGTCCAACGGGAAATATTTGGATTCGAATGAAGTGTGGGTAAATATGTCCGTCTATTATAACGGATTGTTCGTCGGCCATTTGAAGTCCATGTCTTTTATCTCCGGTTAATGCAATGTAGAATATTGGACTGCACTGTAGTTGGTGTATGTCATCTAATCTCTTCTATATGTTTTTGTTTCCCAAATTTACTAGTTCTAGGCAGATTTTTTACATTGAATATTGGATCTGGATGCGTCCACCATACTATGTATGGTGCAATTTGAATGTTGCGACTTCATACATTTCACACATTCCTTGGCTAGAGGGAACAAATTTTACACAATGCATGGCGT

Fln Alignment:

sp_v1.1_unigene15284___MGMLFSRLFASLFGDKEARILVLGLDNAGKTTILYRLQMGEVVSTVPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAVIYVVDSSDTERLVTAKDEFHSILEEEELKGAVVLIYANKQDLPGALDDAAVTEALELHKIKSRQWAIFKTSAIKGEGLFEGLDWLSNTLKAGGR
B8LMU1_______________MGMLFSRLFASLFGDKEARILVLGLDNAGKTTILYRLQMGEVVSTVPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAVIYVVDSSDTERLVTAKDEFHSILEEEELKGAVVLIYANKQDLPGALDDAAVTEALELHKIKSRQWAIFKTSAIKGEGLFEGLDWLSNTLKAGGR

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
1465	83		16		0.994512

SSRs (tot: 1)

Start position	End position	Sequence	Length
681	692	GGA GGA GGA GGA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain