SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15281

Length: 714 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene15281

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	-	-	4.0e-28	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%
Blast2go	protease inhibitor seed storage lipid transfer protein family protein	-	-	0.0	70%

Source	GOs	Term	Type	Identity
Blast2go	lipid transport	GO:0006869	Biological Process	70%
Blast2go	lipid binding	GO:0008289	Molecular Function	70%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	70%

Source	InterPros	Term	Type	Identity
Blast2go	Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor	IPR003612	-	70%
Blast2go	Plant lipid transfer protein/hydrophobic protein helical domain	IPR013770	-	70%
Blast2go	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	IPR016140	-	70%

Full-Lengther Next Prediction

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
219			87	12	0.999964
287		57		42	1.0
320		16		83	0.994512
521	90			10	0.999898
588	57		42		1.0
607	84		15		1.0
638	30			70	1.0
642		30	70		1.0
650	90	10			0.90298
654	90		10		0.90298
655		30	70		1.0
677		14		85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain