SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15276

Length: 1490 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene15276

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Selenoprotein T precursor, putative	-	-	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Blast2go	selenoprotein t	-	-	63%

Source	GOs	Term	Type	Identity
Blast2go	cell redox homeostasis	GO:0045454	Biological Process	63%
Blast2go	selenium binding	GO:0008430	Molecular Function	63%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	63%
Blast2go	plasma membrane	GO:0005886	Cellular Component	63%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NLA1

Fln msg: Overlapping hits, possible frame ERROR between 674 and 649,

Fln protein: MEKVQLLITGLCAFLFISDILNAFNPPSGKPHHHQHHVHHVHSEDSIPIPKEVLKHTDFKPHESLDGGGAGIGAGIGAGAVVQISFCTSCSYRGMALTMKKMLESAFPGVDVELSNYPPPLPKRILSKFVPVLQIGSIVLITAGDHIFPRLGYSAPPPWYYSLKQKRFGVIATTWLLGNALQSxxxxxxxxxxVMCNGDLVFSKLRENRFPGEYELRELVGRSLGAKY*

Protein Length: 230

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTTATTTTATTGTCTTCCTCTTTAGCATTTTTTTTGCACAGCAGAAGGGAGGGCGGAACACTGTGAAGGAAAA_-_ATGGAGAAGGTGCAGCTGTTGATAACGGGACTTTGTGCGTTTCTGTTTATTTCTGATATACTGAATGCATTCAATCCCCCGTCCGGTAAGCCCCACCACCATCAACACCATGTTCACCATGTTCACTCGGAGGATTCGATCCCTATACCTAAAGAAGTCCTCAAACATACCGATTTCAAGCCCCATGAATCTCTGGATGGAGGTGGAGCTGGAATTGGAGCTGGAATTGGAGCTGGTGCAGTAGTTCAAATTTCTTTTTGTACATCATGCTCATACAGGGGCATGGCTTTGACTATGAAGAAAATGTTAGAGAGCGCATTTCCTGGAGTTGATGTGGAACTTTCAAATTACCCCCCACCATTGCCAAAGCGCATTCTCAGCAAGTTTGTGCCAGTGTTACAGATAGGCAGCATTGTGCTTATTACTGCAGGGGATCACATTTTTCCTAGACTGGGATACTCAGCACCTCCTCCTTGGTACTACTCTCTGAAACAGAAACGCTTTGGAGTTATTGCAACTACCTGGCTTCTTGGAAATGCATTGCAGTCGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGTAATGTGTAATGGTGATCTTGTGTTTTCTAAGCTAAGAGAGAATAGGTTTCCAGGTGAATATGAATTGAGGGAACTTGTTGGCAGGTCGTTGGGAGCAAAATATTAG___CCTGCTCTAACTCTGCATTTGCTTTAGAGATGACTGATATAGATGAAAATGTCGTGAATCTTATAAAGCACGTTGGTTCATTGTAACTATTCCCACACATTATTCTTTCTTTCACTAGTTGCAAAAAGACATTCTTTCTTTGAATTGAATGTCTCACTTTCTGTGGTATGCAAACCTTAATTGTTGCTTACAGATTAATGCACCTATTGAAGACATGAAAGTGAATTGTAAGGGAATATCTGCAGTAGTATGAAGGGAATTTTAATTGGTGTTACTTAGTAACATGGATTTTGGAACCAGATTGTAGATGTATTTATATGGTATGTGGTGATCTATCATTGCAAAACCTGTGTACTAGTGTTATCTGGTTCGATATCTGTGGCTTGGTGCAGTTATCATTTTCAGTGTTGCGGGATACCTGTAAAATTGTTTCCTTTGTATGGATATGCATTGTTTGCAGTTGAAGTCTGGATGCCTGAAAAATAACAATATCTGGGTTTCTCATTCGCATCTCGAAGTGGAGATTGGTAGTGAATTATAGCATGTAATTGCAAATAATTATGAACCGATTCAGCACTAAATTTAATTCATCGTTCCAGTGGGGGGGCTTATTTACAAGTTACTGTGCGAGGTGATTTTTCATATGTATCTGAGATGGAGATTGGCCATGAATGCGACGAAATGGTTCCAAATAACTATGAATGGAA

Fln Alignment:

sp_v1.1_unigene15276___MEKVQLLITGLCAFLFISDILNAFNPPSGKPXXXXXXXXXXXSEDSIPIPKEVLKHTDFKPHESLDXXXXXXXXXXXXXX--VVQISFCTSCSYRGMALTMKKMLESAFPGVDVELSNYPPPLPKRILSKFVPVLQIGSIVLITAGDHIFPRLGYSAPPPWYYSLKQKRFGVIATTWLLGNALQSxxxxxxxxxVMCNGDLVFSKLRENRFPGEYELRELVGRSLGAKY
A9NLA1_______________MEKVQLLVTGLCAFLFVSDLLNAFNPPPGKPRHHHHHHAH--SQDSIPISKEVLKHTDFKPLESVDGAGAGAGAGAGAGAGAVVHISFCTSCSYRGTALTMKKMLESAFPGVDVVLSNYPPPLPKRMLSKFVPVLQIGSIVLITAGDHIFPRLGYTAPPPWYYSLKQKRFGVIATTWLLGNALQSxxxxxxxxxVECNGDLVFSKLRENRFPGEYELRELVGRSLGTKY

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
43		88	11		0.999937
46			11	88	0.999937
48			11	88	0.999937
50		11	88		0.999937
52	88			11	0.999937
54		11		88	0.999937
56			11	88	0.999937
58		11		88	0.999937
59	11			88	0.999937
60		11		88	0.999937
581		14		85	0.993533
710		12		87	0.992554
777	87		12		0.992554
964			8	91	1.0
1108	25		75		1.0
1406		75		25	0.996473
1418	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain