SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15275

Length: 1668 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene15275

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	tropinone reductase, putative / tropine dehydrogenase, putative; K08081 tropine dehydrogenase [EC:1.1.1.206]	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	short chain alcohol dehydrogenase-like	-	-	82%

Source	ECs	Term	Type	e value	Identity
Blast2go	Tropinone reductase I.	EC:1.1.1.206	-	0.0	82%

Source	KEGGs	Term	Identity
Blast2go	Tropane, piperidine and pyridine alkaloid biosynthesis	00960	82%
Blast2go	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	82%
Blast2go	Metabolic pathways	01100	82%
Blast2go	Biosynthesis of secondary metabolites	01110	82%

Source	ECs	Term	Type	e value	Identity
AutoFact	Tropinone reductase I.	EC:1.1.1.206	-	0.0	70%

Source	KEGGs	Term	Identity
AutoFact	Tropane, piperidine and pyridine alkaloid biosynthesis	00960	70%
AutoFact	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	70%
AutoFact	Metabolic pathways	01100	70%
AutoFact	Biosynthesis of secondary metabolites	01110	70%

Source	GOs	Term	Type	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	82%
Blast2go	tropine dehydrogenase activity	GO:0050356	Molecular Function	82%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	82%
Blast2go	intracellular	GO:0005622	Cellular Component	82%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AD75

Fln msg:

Fln protein: MGESSSSRQQRWSLQGMTALVTGGTKGIGRAVVEELTSLGAAVYTCARTEKDLNECLTQWKESGLQVDGTVCDLSSRSAREELIEKCSSFCNGKLNMLINNVGTNMRKPTVGYTAEDFSFLMSTNFESGYHLCQLSHPLLKASEKGSIVFISSVAGVVAIFSGTIYAASKGAMNQLTKNLACEWASDNIRVNCVAPWYTKTSLVEKLLEDKEFVENILDRTPLKRLAEPHEVSSLVAFLCLPAASYITGQVISVDGGMTVNGFYI*

Protein Length: 267

Fln nts: ATGGGGAACACGAAACCTGTGTTATCCACCCAGACATTTATTTATCCATTTCTGTAAAACCATAGTGTGCTATGCATATATTTTGTATAGATCACGAAGCTTCAATTATTCTGCTGATGAATCATCATCGATTGGAGGCTTCAGTATCTGTTTGTCTTGCAATACCACTCTTCAGTTAAGTTTAGATTTTTTCCGCTGGTCTTGACTTTGTCTGTTGCTGTGCCCAGGAGATAATATATAGGATCCCGAGAACTCATTTCATCAAGTGTTTTGCAAAGTTGGGTTGTATTTTTTCATTGCACATAGAGTAGG_-_ATGGGGGAGAGTTCAAGTAGCAGACAACAGAGGTGGTCGCTGCAAGGCATGACAGCCCTAGTCACTGGCGGTACAAAAGGAATTGGACGTGCTGTTGTGGAGGAATTAACTAGTTTAGGAGCTGCTGTTTATACGTGTGCGCGTACAGAGAAGGATCTTAATGAATGTTTGACTCAGTGGAAGGAATCCGGGCTGCAGGTTGATGGTACAGTCTGTGATTTATCATCTCGTTCAGCACGAGAGGAGCTGATTGAAAAATGTTCTTCGTTTTGCAATGGGAAACTCAATATGTTGATTAATAATGTCGGTACAAATATGAGGAAGCCCACTGTGGGTTATACAGCTGAGGATTTCTCATTTCTTATGTCTACCAACTTTGAATCAGGTTATCATCTATGTCAGCTGTCACATCCTCTACTAAAAGCATCAGAAAAGGGAAGCATTGTTTTCATTTCATCTGTTGCTGGTGTTGTAGCTATTTTCTCTGGTACCATATATGCAGCCAGCAAAGGAGCAATGAACCAACTCACAAAGAATCTTGCATGTGAGTGGGCAAGTGACAATATACGTGTTAACTGTGTGGCACCATGGTATACCAAGACATCACTCGTGGAAAAGCTCTTGGAAGACAAAGAGTTTGTAGAAAATATACTTGATCGTACTCCTTTAAAGCGTCTTGCTGAGCCTCATGAAGTTTCATCCCTCGTAGCTTTTCTTTGCCTACCTGCAGCTTCATATATTACTGGTCAGGTTATTTCTGTTGATGGAGGAATGACAGTAAACGGTTTCTATATATGA___GATCAGAAAGTAAGGCTTAGTGTTGTGTTTCTCTAAAATACCAAGGTAAGGTTTGATGTGATCTTAAAGTATCCCTATGTTGATATTTCATTAAGTATTAACACTCTTTTTCATCTAAACTTTGTAATAAATGTTTAATTAATTTGTATAACCTCTGACCATTTATGATAACCTGATTTGATTACATTAGAGACGTAATAGTTGCATCTCCATAGAGTTCCCGGTCATGCATTGGTTTATGCTTTGTTTGAGAAACAAATTGCAAGGTAAACTTTGCATGATGTTTTAAACCCTTCATGGTCTGAATCATGGCATGCTTGGTGGCTGAATTTCTCATGCAGTCAGTTACTTCCGGCTGTTGTACCATCTGAATATTGATGTTACTATATGTTTCCTTCTACATTTGAAGTGTTATATATTGTCACTGATATATCCTCACAAGACACTCAGAGTTTGGTCTACATACCCTCTATCCGTTTAAGAGTTATTGTAATTATGTTTATTTAGATGCTATGTGTTTTCAGTAGCATGACTATTTCATTTTCTTTTAATTGTAAA

Fln Alignment:

sp_v1.1_unigene15275___MGEXXXXXXXXXXLQGMTALVTGGTKGIGRAVVEELTSLGAAVYTCARTEKDLNECLTQWKESGLQVDGTVCDLSSRSAREELIEKCSSFCNGKLNMLINNVGTNMRKPTVGYTAEDFSFLMSTNFESGYHLCQLSHPLLKASEKGSIVFISSVAGVVAIFSGTIYAASKGAMNQLTKNLACEWASDNIRVNCVAPWYTKTSLVEKLLEDKEFVENILDRTPLKRLAEPHEVSSLVAFLCLPAASYITGQVISVDGGMTVNGFYI
D5AD75_______________MGESSSSRQQRWSLQGMTALVTGGTKGIGRAVVEELTGLGAAVYTCARTEKDLNECLTQWKEAGLHVGGSVCDLSSRSAREELVEKSSSFCNGKLNMLINNVGTNMRKPTVGYTAEDFSFLMSTNFESAYHLCQLSHPLLKASGKGSIVFISSVAGVVAIFSGTLYAASKGAMNQITKNLACEWASDKIRVNCVAPWYTKTSLVEKLLEDKEFVEKILDRTPLRRLAEPHEVSSLVAFLCLPAASYITGQIISVDGGMTVNGFYI

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
756	10		90		0.90298
763		10		90	0.90298
1063			33	66	0.997452
1125		33		66	0.997452
1439		87		12	0.999964
1509		72		27	1.0
1512		72		27	1.0
1555	80		20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain