SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15274

Length: 1244 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene15274

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Ubiquitin n=49 Tax=Eukaryota RepID=UBQ10_ARATH	-	-	98%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	polyubiquitin	-	-	98%

Source	GOs	Term	Type	Identity
Blast2go	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	98%
Blast2go	response to UV-B	GO:0010224	Biological Process	98%
Blast2go	response to salicylic acid stimulus	GO:0009751	Biological Process	98%
Blast2go	protein ubiquitination	GO:0016567	Biological Process	98%
Blast2go	aging	GO:0007568	Biological Process	98%
Blast2go	protein binding	GO:0005515	Molecular Function	98%
Blast2go	nucleolus	GO:0005730	Cellular Component	98%
Blast2go	vacuole	GO:0005773	Cellular Component	98%
Blast2go	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	98%

Source	InterPros	Term	Type	Identity
Blast2go	Ubiquitin	IPR000626	-	98%
Blast2go	Ubiquitin conserved site	IPR019954	-	98%
Blast2go	Ubiquitin supergroup	IPR019955	-	98%
Blast2go	Ubiquitin subgroup	IPR019956	-	98%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: C0PSZ6

Fln msg: ERROR#3, very serious frame error, warning!, putative chimeric sequence! or repetitive structure query STOP codon too far from subject stop. Distance to subject end: 39 aas, putative chimeric sequence, atg_distance in limit (1-15): atg_distance = 1, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 340 - 458

Fln protein: VFALHKSLQSVGEGTESVSTVRVQVVCYHLLKTNMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKxxxxxxQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF*

Protein Length: 341

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGATTCTGAGTTTTCGCTTTGCACAAGTCACTGCAATCGGTAGGGGAAGGAACAGAGAGCGTCTCTACCGTTCGAGTTCAGGTGGTGTGTTATCATTTATTAAAAACCAATATGCAGATATTTGTAAAGACATTGACTGGAAAGACCATCACCCTTGAGGTGGAGAGCTCTGATACCATCGACAATGTCAAGGCGAAGATACAGGATAAGxxxxxxxxxxxxxxxxxxCAGCAGCGGCTCATCTTTGCTGGCAAGCAGTTGGAGGATGGACGCACTCTCGCTGACTACAACATCCAAAAGGAATCCACTCTCCACCTCGTTCTACGTCTGAGAGGTGGCATGCAGATCTTTGTCAAAACCCTCACTGGCAAGACGATCACGCTTGAAGTTGAGAGCTCTGATACTATCGACAATGTGAAGTCTAAAATTCAAGACAAGGAGGGTATACCCCCAGATCAGCAGAGGTTGATCTTTGCAGGAAAACAACTCGAGGATGGACGCACTCTTGCAGATTACAACATTCAGAAAGAATCGACTCTACACCTTGTCCTCCGTCTCAGGGGAGGAATGCAAATATTTGTCAAAACCTTGACTGGCAAGACCATCACCCTTGAAGTTGAGAGCTCTGATACTATTGATAATGTGAAGGCGAAGATCCAGGACAAAGAGGGGATTCCTCCAGATCAGCAGAGATTGATCTTTGCAGGGAAGCAACTTGAAGATGGGAGGACTTTGGCCGACTATAACATTCAGAAGGAATCCACCCTGCATCTTGTCCTGAGGTTACGTGGTGGGATGCAAATATTTGTGAAGACCTTGACGGGAAAGACTATTACATTGGAGGTTGAGAGCTCGGATACGATTGATAATGTGAAGGCGAAGATTCAGGACAAGGAAGGGATCCCACCTGATCAGCAGAGGCTCATTTTTGCTGGCAAGCAGCTGGAGGACGGGCGAACCCTTGCTGATTATAATATCCAGAAGGAATCCACGCTCCACCTTGTCTTACGTTTGCGTGGTGGGTTTTGAGGTTTTAGGGTTACTTAATAGCTCCTACTTGTCTTTCTAGATGGTTGAAATCGGACTGGTATCTGCATTTATCTGTTATATGTTATAGGGTAATCATGTGTTATGTTGTCTATGGTCACTTCTTGGTTATGTTATGTTCGCTGAAGTCTAATGAAATAAAACATCTATTTTCATGTTTGTGTGAAGaAAAAAC

Fln Alignment:

sp_v1.1_unigene15274___xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
C0PSZ6_______________xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
1158	28		71		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain