SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15273

Length: 1066 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene15273

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Class IV chitinase Ab n=3 Tax=Pinus monticola RepID=Q596H7_PINMO	-	-	81%
FL-Next	tr=Class IV chitinase Ab; Pinus monticola (Western white pine) (Strobus monticola).	-	-	92%
Blast2go	class iv chitinase chia4-	-	-	92%

Source	ECs	Term	Type	e value	Identity
Blast2go	Chitinase.	EC:3.2.1.14	-	0.0	92%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Amino sugar and nucleotide sugar metabolism	00520		0.0	92%

Source	GOs	Term	Type	Identity
Blast2go	cell wall macromolecule catabolic process	GO:0016998	Biological Process	92%
Blast2go	chitin catabolic process	GO:0006032	Biological Process	92%
Blast2go	chitinase activity	GO:0004568	Molecular Function	92%
Blast2go	chitin binding	GO:0008061	Molecular Function	92%

Source	InterPros	Term	Type	Identity
Blast2go	Glycoside hydrolase, family 19, catalytic	IPR000726	-	92%
Blast2go	Chitin-binding, type 1	IPR001002	-	92%
Blast2go	Glycoside hydrolase, family 19	IPR016283	-	92%
Blast2go	Chitin-binding, type 1, conserved site	IPR018371	-	92%
Blast2go	Lysozyme-like domain	IPR023346	-	92%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q596H7

Fln msg:

Fln protein: MGSSSGNSVIVLVVVLVLLLAGVSVNAQNCGCASGLCCSKYGYCGSTSAYCGDGCQSGPCSSSGGGSPSGGGGSVGTIISQSFFNGLAGGAASSCEGKGFYTYDAFIAAANAYSGFGTTGSADVTKRELAAFFANVMHETGGMCYINERTPPMNYCMSSATWPCASGKSYHGRGPLQLSWNYNYGAAGQNIGFDGVNNPEKVGQDSTISFKTAVWFWMDNSNCHTAITSGQGFGGTIKAINSQECNGGNSGEVNSRVNYYKNICSQLGVDPGANVSC*

Protein Length: 279

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAAATAATCTCTGTAAGTGGGGAGTCTTAAGAAATTATTCGCA_-_ATGGGGAGTAGTAGCGGTAACTCAGTAATTGTGCTGGTGGTGGTGCTAGTCCTGCTACTGGCGGGTGTGAGTGTTAATGCTCAAAACTGTGGCTGTGCCAGCGGACTGTGTTGCAGCAAGTATGGATACTGCGGGAGCACCTCTGCTTACTGCGGCGATGGCTGCCAGAGCGGTCCTTGTAGCAGTTCAGGAGGAGGATCTCCAAGTGGCGGAGGTGGAAGCGTGGGTACCATAATTTCCCAGAGTTTCTTCAATGGCCTCGCGGGCGGAGCTGCTAGCTCCTGCGAGGGCAAGGGATTCTACACTTACGATGCTTTCATCGCAGCGGCCAATGCGTATTCTGGATTTGGCACCACCGGATCCGCAGACGTCACAAAGAGAGAACTCGCGGCCTTCTTCGCTAATGTTATGCACGAAACTGGAGGGATGTGCTACATCAATGAGAGAACCCCTCCCATGAACTACTGTATGAGTTCAGCCACGTGGCCGTGTGCGAGCGGTAAGAGCTACCATGGACGTGGCCCTCTCCAGTTGAGCTGGAATTACAATTATGGAGCGGCTGGGCAGAACATTGGGTTCGACGGGGTGAACAACCCAGAGAAGGTGGGGCAAGACTCCACCATTTCGTTCAAGACGGCGGTCTGGTTCTGGATGGACAACAGCAACTGCCACACCGCCATAACGTCAGGGCAGGGCTTCGGTGGCACAATCAAAGCCATCAACAGCCAGGAATGCAACGGTGGAAACAGTGGGGAAGTGAATAGCAGAGTGAACTACTACAAGAATATCTGTAGCCAGTTGGGTGTGGATCCTGGAGCCAACGTCTCGTGCTAA___ATCTCTCTTTTTCTTCATGGCTACTAAATATATGAATAAGACATCAATGATCATTGATGTCCATGGCCATGGCCACCTAGTAAATAAAAATTGCTCTGCACATCTCTTTGCAAATATCATCTTCATCCTACTAATGAAATTTCTTTGAATTAAACAGTTTCGAAT

Fln Alignment:

sp_v1.1_unigene15273___QNCGCASGLCCSKYGYCGSTSAYCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFFNGLAGGAASSCEGKGFYTYDAFIAAANAYSGFGTTGSADVTKRELAAFFANVMHETGGMCYINERTPPMNYCMSSATWPCASGKSYHGRGPLQLSWNYNYGAAGQNIGFDGVNNPEKVGQDSTISFKTAVWFWMDNSNCHTAITSGQGFGGTIKAINSQECNGGNSGEVNSRVNYYKNICSQLGVDPGANVSC
Q596H7_______________QNCGCASGLCCSQFGYCGSGSTYCGTGCKSGPCYPSGGGSPSDGGGSVGTIISQSFFNGLAGGAASSCEGKGFYTYNAFIAAANAYSGFGTTGSADVTKRELAAFLANVMHETGGMCYINERTPPMIYCMSSATWACASGKSYHGRGPLQLSWNYNYGAAGQSIGFDGVNNPEKVGQDSTISFKAAVWFWMKNSNCHSAITSGQGFGGTIKAINSQECNGGNSGEVNSRVNYYKNICSQLGVNPGDNLSC

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
917	14	85			0.999981
919			14	85	0.999981
932		14		85	0.999981
943	14	85			0.999981
967			50	50	1.0
969		85	14		0.999981
977		90		10	0.90298
983	90	10			0.90298
984	90	10			0.90298
987	90		10		0.90298
988	90		10		0.90298
989	90	10			0.90298
990	50			50	1.0
993			15	85	1.0
1052		25		75	0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain