SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15266

Length: 1248 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene15266

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Eukaryotic translation initiation factor, putative n=1 Tax=Ricinus communis RepID=B9RJC4_RICCO	-	-	1.0e-38	39%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%
Blast2go	eukaryotic translation initiation factor 5	-	-	0.0	60%

Source	GOs	Term	Type	e value	Identity
Blast2go	binding	GO:0005488	Molecular Function	0.0	60%

Source	InterPros	Term	Type	Identity
Blast2go	eIF4-gamma/eIF5/eIF2-epsilon	IPR003307	-	60%
Blast2go	MIF4-like, type 1/2/3	IPR016021	-	60%
Blast2go	Armadillo-type fold	IPR016024	-	60%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AE08

Fln msg:

Fln protein: MVMLTIPEEGTTQRTDMKTVGKTVSKNRMAEPESKPAAENGKKTTKLMPDSDDKEEETDVGEKDLKPAKGLSIHDQLLAHFNDFLQREKSPNQLVEYMQSLNGSPQEVMTALFEALFKGVGKGFSKEAAKRKIYLSKALQNEDSQLLLLNAIDAFCKHASADAVKEVALVLKVLYDDDILEEDVIFQWYDNRTLGAEGNKSSMWKNVKPFVEWLRSAESESEED*

Protein Length: 226

Fln nts: GCAAGAAAGATCCAAAGAAGAAGAAAAACAACGATGTGAATTCGAAGGTGTCAAAGAAGAAATCTTCTGATGAGGATGATCAATCTCCTCGAGGGAGCCAAGAAGCCCATGATGAGGAAGCTGATGATGATGATGATGATGATGATGGAGTGGAATGGCAGACTGACACATCTGTTGAGGCTGCTCAGAAGAGGATTAAGGAGCAACTTACTCTTGCTACCAGTGAA_-_ATGGTGATGTTAACTATACCTGAAGAAGGTACAACGCAACGTACTGATATGAAGACTGTAGGGAAGACTGTTTCAAAGAACAGAATGGCTGAGCCTGAGAGCAAGCCTGCTGCTGAGAATGGTAAGAAAACCACAAAACTCATGCCAGACAGTGATGATAAGGAGGAAGAGACTGATGTTGGGGAGAAAGACTTGAAGCCAGCTAAAGGGCTAAGCATTCACGATCAGCTTCTTGCTCATTTTAATGATTTTCTTCAAAGGGAAAAGTCTCCTAATCAGTTGGTGGAGTACATGCAATCCCTCAATGGTTCTCCGCAGGAAGTGATGACTGCATTGTTTGAGGCCCTTTTTAAGGGTGTTGGCAAGGGATTTTCCAAGGAGGCTGCAAAGAGAAAGATCTACTTGTCGAAAGCTCTTCAAAATGAAGATTCCCAGTTGCTGCTGCTGAATGCAATTGATGCTTTTTGCAAGCATGCCAGTGCAGATGCAGTCAAGGAGGTTGCATTGGTTTTGAAAGTTTTATATGATGATGACATATTGGAAGAAGATGTTATTTTCCAGTGGTATGATAATCGTACTTTGGGTGCTGAAGGCAATAAATCTTCAATGTGGAAAAATGTTAAGCCATTTGTTGAGTGGCTCAGAAGTGCCGAGTCTGAATCCGAAGAGGATTAG___TTAGCGAACTAAATATCTTTGACCATTTTAAGTAGTGTCACCGAATAGACTAGTCTGTTTTTGTTTTTCTCTGAGATTCTAGAGGCAGGATGAGACATTTCCACAGCATTATATCTTTTATATTATCTGGTTTGAATAAAAATATTCAGGGACCATGTTGTGTTTTGAATTATTGCACCTGTCTGATTCTGACATTTTGTTCAGATAAATATTATTTATCAACCTTTCCATTATTATTCAGATATGATGTGGTTATAAATTTTTGTTAGGTTTGATTATATATATTGTACTCTTTGAATGGTGCGGGGTTTGATGATGCCCAATCATGATTGGTGATTAATTTCTC

Fln Alignment:

sp_v1.1_unigene15266___MVMLTIPEEGTTQRTDMKTVGKTVSKNRMAEPESKPAAENGKKTTKLMPDSDDKEEETDVGEKDLKPAKGLSIHDQLLAHFNDFLQREKSPNQLVEYMQSLNGSPQEVMTALFEALFKGVGKGFSKEAAKRKIYLSKALQNEDSQLLLLNAIDAFCKHASADXXXXXXXXXXXXYDDDILEEDVIFQWYDNRTLGAEGNKSSMWKNVKPFVEWLR
D5AE08_______________MVMLTIPEEDTKQRADIKAVEKTVSKNAMAEPENKPAAENGKISTKPMPESDDEEEVSDVDAKDLKTAKGLSIHDQLLVFFNDFLQKEKSPNQLVEYMQSLSGSPQELMTALFEALFKGVGKGFSKEVAKKKIYLSKALQIEDSQLLLLNAVDAFCKHASADAVKEVALVLKVLYDDDILEEDVIFHWYDNRTLGAEGNNSSMWKNIKPFVEWLR

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
999	76			23	1.0
1053	42		57		1.0
1070	90	10			0.90298
1081		66		33	1.0
1092		14		85	0.993533
1140		25		75	0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
122	147	TGA TGA TGA TGA TGA TGA TGA TGA TG	26

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain