SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15264

Length: 1913 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene15264

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	cholinephosphate cytidylyltransferase, putative (EC:2.7.7.15)	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	ctp:phosphorylcholine cytidylyltransferase	-	-	90%

Source	ECs	Term	Type	e value	Identity
Blast2go	Choline-phosphate cytidylyltransferase.	EC:2.7.7.15	-	0.0	90%

Source	KEGGs	Term	Identity
Blast2go	Phosphonate and phosphinate metabolism	00440	90%
Blast2go	Glycerophospholipid metabolism	00564	90%
Blast2go	Metabolic pathways	01100	90%

Source	GOs	Term	Type	e value	Identity
Blast2go	biosynthetic process	GO:0009058	Biological Process	0.0	90%
Blast2go	choline-phosphate cytidylyltransferase activity	GO:0004105	Molecular Function	0.0	90%

Source	InterPros	Term	Type	Identity
Blast2go	Cytidylyltransferase	IPR004820	-	90%
Blast2go	Cytidyltransferase-related	IPR004821	-	90%
Blast2go	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	90%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQQ2

Fln msg:

Fln protein: MTTPASRKRLASHMDESLSPHESETDSEEEAEVFIESLDQNESEEEEEEEVFDCDEWAPPARVFDPHPCPDPSDTEKPVRVYADGIYDLFHFGHARSLEQAKKSFPNVYLLVGCCSDAVTHRYKGKTVMTEAERYESLRHCRWVDEVVPDAPWVITKEFLDKHQIDFVAHDALPYADASGAGNDVYEYIKSIGKFKETKRTEGISTSDIIMRMLKDYNEYVMRNLARGYTRKDLGVSYVKEKQLRVNMSITKLRQKVKEQQERVGKKLHIVATRAGIHHSEWVENADRWVAGFLEMFEEGCYIMETAIKTRIQKGLMKEQVKKRSASKMLAGSFQ*

Protein Length: 337

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGTCAGCATGTATGGATCTTCATCGCATCTCCTATATGTAGGCGTAGCTGATTTAAATAAAGAGAAACACAAGTCAAAATATCATTCCATTCATACCGAGCTGTGAGAATACCGGTGTCCAAGCCCGCGTAAATGGTTGTATCCCTGTCTCGCTTTTAGCTGAAGCC_-_ATGACGACTCCTGCATCCCGTAAGAGGCTTGCAAGTCACATGGACGAATCCCTTTCCCCCCACGAATCTGAAACAGATTCAGAGGAAGAAGCAGAAGTATTTATCGAATCACTTGATCAGAACGAATCAGAAGAAGAGGAGGAAGAAGAAGTATTCGATTGCGATGAATGGGCACCTCCCGCCCGCGTGTTCGATCCCCACCCCTGCCCAGATCCGTCAGATACTGAGAAGCCTGTTCGCGTTTACGCAGACGGAATATACGATCTCTTCCACTTCGGCCACGCCCGATCTCTGGAACAGGCCAAGAAATCGTTCCCGAATGTGTATTTGCTGGTGGGATGCTGTAGCGATGCGGTCACACACAGGTACAAGGGTAAGACGGTGATGACCGAAGCCGAACGCTATGAATCCCTTCGTCATTGCAGATGGGTGGACGAGGTTGTGCCAGATGCTCCTTGGGTGATCACAAAAGAGTTTTTAGACAAGCACCAAATTGACTTTGTTGCTCATGATGCCCTTCCATATGCCGATGCAAGTGGAGCAGGCAATGATGTGTATGAATATATCAAATCAATTGGCAAATTTAAGGAAACAAAACGTACTGAGGGTATCTCAACATCAGATATCATAATGCGCATGCTGAAAGACTACAATGAATATGTAATGCGCAACTTGGCTCGAGGTTACACAAGGAAGGACCTTGGAGTCAGCTATGTGAAGGAAAAGCAATTGAGGGTCAACATGAGCATAACTAAATTGCGTCAGAAGGTGAAGGAGCAACAAGAGCGTGTAGGGAAAAAGTTACATATCGTTGCCACAAGAGCTGGAATACATCACAGTGAGTGGGTTGAAAATGCAGATAGATGGGTGGCTGGTTTTCTAGAGATGTTTGAGGAGGGGTGTTATATAATGGAAACGGCTATCAAGACTCGGATTCAGAAAGGTTTGATGAAGGAGCAAGTGAAAAAACGATCAGCTTCAAAAATGCTGGCAGGCTCCTTCCAGTAA___TGCCTGTAATTTAGTGGAGTATATCAGTGTGGTCACAAACAATTTATCCAGGCTTGAAAGTTGTTTATATATGTTTGGGATTCATGAAATTTGACTGAGTAGAAGTATATGAGTTTTTATATCCCGGCCTGCTGAATGCCATCCCTTTTTACTGTATTTGTTTGTTCCTATGCTTTTGCATGGTGTTTGACCTGATCAGTTTTTTGGCTATTTTTTGTTTAACAAACATTATATTTTCATTTAATGTACAGTGGTAGTGGACAGGCCGAAACCTGAACATTATTTTGGAACAGAACTTCAACTTTAAGGAGGACCATTTACAATGTTATTTATTTACATGCAAGGCACATTTCGTCAGTTTCTTCAGAAAGGAAATTTGGGCAGAAACAATTTCCTATCTTAGAACCAGCGGAGTTTAACAGGCTAGAATTGCCAGAAGCCTTGGGTAGCCAAACACGTTGTGGAATGAATTCTTGAAAGAACATAGTTGGAGATGCTTTAGTCAGCTGTTGTACATTGTAGATGGATGGATTTTCAATCATTGCAGTGTGCATATTATTAATGGTATTTATATGAGACATCTTATCTTGATTTCACACACCTTTTGTTGGATTTTGAGAGCCTGATAACATTACTTTTAGCGTATTTCAAAGGAAACGCTTGAACTCGTTTGATGCGTAATGGTTGAATAGAAAGTGCATAACATTCAATGAC

Fln Alignment:

sp_v1.1_unigene15264___MTTPASRKRLASHMDESLXXXXXXXXXXXXXX-VFIESLDQNXXXXXXXXX-VFDCDEWAPPARVFDPHPCPDPSDTEKPVRVYADGIYDLFHFGHARSLEQAKKSFPNVYLLVGCCSDAVTHRYKGKTVMTEAERYESLRHCRWVDEVVPDAPWVITKEFLDKHQIDFVAHDALPYADASGAGNDVYEYIKSIGKFKETKRTEGISTSDIIMRMLKDYNEYVMRNLARGYTRKDLGVSYVKEKQLRVNMSITKLRQKVKEQQERVGKKLHIVATRAGIHHSEWVENADRWVAGFLEMFEEGCYIMETAIKTRIQKGLMKEQVKKRSASKMLAGSFQ
B8LQQ2_______________MATPASRKRLASQMDESLSHHETESDSEEEAEEVFIESLAHHESESEEEEEEVFDCDEWAPPARVFDPHPCPDPSNTEKPVRVYADGIYDLFHFGHARSLEQAKKSFPNVYLLVGCCSDAVTHMYKGKTVMTEAERYESLRHCRWVDEVVPDAPWVITKEFLDKHQIDYVAHDALPYADTSGAGNDVYEYIKSIGKFKETKRTEGISTSDIIMRMLKDYNEYVMRNLARGYTRKDLGVSYVKEKQLRVNMSITKLRQKVKEHQERVGQKLHIVATRAGIHHSEWVENADRWVAGFLEKFEEGCYLMETAIKTRIQKGLMKEQVKKRSASKMLAGSLQ

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
1122	95		4		0.995482
1162	95		4		0.997218
1289	95		3		0.999088
1312		2		97	0.941605
1767	24		75		1.0
1784		11		88	0.923564
1785		88		11	0.923564
1787	11			88	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain