SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15255

Length: 417 nt

Origin of reads: Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene15255
CGTCGTGACCTTGGCTGTCACTCATGTTCTCGTTCTCGGGGCCGAGGGTGGGTAACACGGCGTGTCAAGGATCGGTGCGAGGAGCTGGGTCTCAAGTTTCTGAGAGTGGTAAACGTGCACGACAGCGTGCCGAAGGTCCCCGGGATTCTGTTCAATGAAAAATTCAAGATTATGAAGCAGTTGATCGACAGGCTTCCGTGGAGTTACAGTCATGTAGGTGTGGAGCTGGCTCTTGATCACACACATTCTCCGTTCCTGAAGCCCACTAACGATCTGTCCTGCTTTCATAATCTGGAGGCCCTTCTGCACCTCCTGGACGGATACCATGGGCGGGAACACCGCTTCCATCTGTCGTCTGGTCGCGATCCAGCTATGGTGAACAAGTCGTGTGATTTTCTGAAGGAACACTACCTGGTT

Ace file of the UniGene sp_v1.1_unigene15255

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	lipase class 3 family protein	-	-	1.00053e-42	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%
Blast2go	lipase class 3 family protein	-	-	0.0	77%

Source	ECs	Term	Type	e value	Identity
Blast2go	Triacylglycerol lipase.	EC:3.1.1.3	-	0.0	77%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Glycerolipid metabolism	00561		0.0	77%
Blast2go	Metabolic pathways	01100		0.0	77%

Source	GOs	Term	Type	Identity
Blast2go	lipid metabolic process	GO:0006629	Biological Process	77%
Blast2go	triglyceride lipase activity	GO:0004806	Molecular Function	77%
Blast2go	plastid	GO:0009536	Cellular Component	77%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKE3

Fln msg: Distance to subject end: 67 aas, your sequence is shorter than subject: 139 - 554

Fln protein: RRDLGCHSCSRSRGRGWVTRRVKDRCEELGLKFLRVVNVHDSVPKVPGILFNEKFKIMKQLIDRLPWSYSHVGVELALDHTHSPFLKPTNDLSCFHNLEALLHLLDGYHGREHRFHLSSGRDPAMVNKSCDFLKEHYLV

Protein Length: 140

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGTTCTCGTTCTCGGGGCCGAGGGTGGGTAACACGGCGTGTCAAGGATCGGTGCGAGGAGCTGGGTCTCAAGTTTCTGAGAGTGGTAAACGTGCACGACAGCGTGCCGAAGGTCCCCGGGATTCTGTTCAATGAAAAATTCAAGATTATGAAGCAGTTGATCGACAGGCTTCCGTGGAGTTACAGTCATGTAGGTGTGGAGCTGGCTCTTGATCACACACATTCTCCGTTCCTGAAGCCCACTAACGATCTGTCCTGCTTTCATAATCTGGAGGCCCTTCTGCACCTCCTGGACGGATACCATGGGCGGGAACACCGCTTCCATCTGTCGTCTGGTCGCGATCCAGCTATGGTGAACAAGTCGTGTGATTTTCTGAAGGAACACTACCTGGTT

Fln Alignment:

sp_v1.1_unigene15255___KDRCEELGLKFLRVVNVHDSVPKVPGILFNEKFKIMKQLIDRLPWSYSHVGVELALDHTHSPFLKPTNDLSCFHNLEALLHLLDGYHGREHRFHLSSGRDPAMVNKSCDFLKEHYLV
B8LKE3_______________KDRCEELGLKFLRVVNVHDIVPKVPGILFNETFKMMKQWIDKLPWSYCHVGVKLVLDHTQSPFLKPTNDSSCFHNLEAHLHLLDGYHGRGQRFCLTSRRDPALVNKSCDFLKEHHLV

SNPs (tot: 37)

Position	A %	C %	G %	T %	Probability
60			60	40	1.0
65	40			60	1.0
67	60	40			1.0
68	60			40	1.0
69			60	40	1.0
72			40	60	1.0
74			60	40	1.0
77		40	60		1.0
78	40	60			1.0
79		40	60		1.0
80	60			40	1.0
81		40	60		1.0
82	40		60		1.0
87			80	20	0.995493
179	71	28			1.0
182		28		71	1.0
190	71			28	1.0
197	14	85			0.993533
198		28	71		1.0
199	14			85	0.993533
201		14	85		0.993533
203			85	14	0.993533
256		90	9		0.999842
260	90	9			0.999842
261		9	90		0.999842
262		90		9	0.999842
263		90		9	1.0
264		71	28		1.0
265	71		9	18	1.0
268	71		28		1.0
269	90			9	1.0
271	9	18	71		1.0
272	71	9		18	1.0
274		81	18		1.0
275	9	18			1.0
282		12	84		1.0
283	12	87			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain