SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15251

Length: 1294 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene15251

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative histone H1 n=2 Tax=Pinaceae RepID=Q84L42_PINPS	-	-	1.0e-35	68%
FL-Next	tr=Putative histone H1; Pinus pinaster (Maritime pine).	-	-	0.0	100%
Blast2go	histone h1-like protein	-	-	2.19357e-35	82%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleosome assembly	GO:0006334	Biological Process	2.19357e-35	82%
Blast2go	DNA binding	GO:0003677	Molecular Function	2.19357e-35	82%
Blast2go	nucleosome	GO:0000786	Cellular Component	2.19357e-35	82%
Blast2go	nucleus	GO:0005634	Cellular Component	2.19357e-35	82%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Histone H1/H5	IPR005818	-	2.19357e-35	82%
Blast2go	Histone H5	IPR005819	-	2.19357e-35	82%
Blast2go	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	2.19357e-35	82%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q84L42

Fln msg:

Fln protein: MASTDPPADTVPAEPVANEDVKAAEEKPVKAPKEKKVKTPKEKKPKAAKGSKPPPAHPPYFQMISEAIVALKERGGSSPYAIAKFLSEKYKSDLPPVFKKKLNVQLRNLTNSGKLTKVKGSYKLAEKEKKADAPKPKTEKKPAAKKPKAPAAKAPAKAPSKASKPAAPKKAEKPVAPKKAAAPKKAAKPAAPKAAAPKAKKPAAAAKPAAPKRSSTRTAAKPAAPKAAKKPTPKKAGGAAKKAKK*

Protein Length: 247

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCAAATCCCATTCCGCCATTTTCAGGTTGCTGAATTTAGCAGTCCTGCGATTGAATTCGGTTTCGGATAGTAGAGCTGGATAAATTTTGCGCCGTGAAGTCGAGCTTCTGTGCTCTGTAATTCGGTACTAATCC_-_ATGGCTTCCACTGATCCTCCTGCGGATACCGTCCCTGCCGAGCCCGTGGCGAATGAAGATGTCAAAGCGGCTGAAGAAAAGCCCGTGAAGGCACCGAAGGAGAAAAAGGTGAAAACCCCAAAGGAAAAGAAGCCGAAGGCTGCCAAGGGTTCTAAACCCCCGCCTGCACATCCCCCTTATTTCCAGATGATTTCTGAAGCCATAGTGGCTCTGAAAGAGCGCGGCGGTTCTAGCCCTTATGCGATAGCGAAGTTCTTGAGCGAAAAGTATAAATCTGATCTGCCCCCTGTGTTCAAGAAGAAACTCAATGTACAGCTCCGGAATTTGACAAATTCCGGCAAGCTAACCAAAGTGAAAGGCTCTTATAAGCTTGCCGAGAAAGAAAAAAAGGCCGACGCGCCCAAGCCAAAGACAGAAAAGAAACCTGCAGCCAAGAAGCCTAAAGCACCTGCTGCCAAGGCTCCAGCAAAGGCCCCTTCCAAGGCGTCTAAGCCCGCGGCACCTAAGAAGGCCGAGAAGCCTGTGGCTCCAAAGAAAGCTGCGGCTCCGAAGAAGGCTGCGAAGCCCGCGGCTCCAAAGGCGGCGGCTCCCAAAGCCAAGAAACCGGCTGCCGCCGCTAAGCCTGCTGCTCCGAAAAGGTCTTCTACAAGAACGGCTGCCAAGCCCGCAGCTCCCAAGGCCGCGAAGAAGCCTACACCCAAGAAAGCCGGGGGGGCTGCAAAGAAAGCCAAGAAGTGA___GGAATTTTTTCTTTTGAATCTGGGCGTGTACACTATAATTATTATCATTATGTCAGTTTACAGATTGAAATGCCTGTTTTTGTCATAGTCGATGGGGTATTTTTGGTGTTAAGCCCTTCTCCATTATCTGGATATTCTATGTCACTGAACTCTACTCTCAGCTGTTATAAGCAAAATGTTCAGGAATGAACTCATTTGCTTGTAACGTCCGACTGTAACTTTCTTTTTTAATTTCATTTCTGGATCATTTGAAAATTGTACGTCGTTTCTCGCGATATATAAAAATTCAGGTCCTCATTCCATGATTTTTGACAATGCATTGATGGTTACAGTAACTGAATATGTTTGTTAAATTTTTGAACGAGGGTTTAAATGTGATACAGAGACAAATGTTTGC

Fln Alignment:

sp_v1.1_unigene15251___MASTDPPADTVPAEPVANEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYFQMISEAIVALKERGGSSPYAIAKFLSEKYKSDLPPVFKKKLNVQLRNLTNSGKLTKVKGSYKL
Q84L42_______________MASTDPPADTVPAEPVANEDVKAAEEKPVKAPKEKKVKTPKEKKPKAAKGSKPPPAHPPYFQMISEAIVALKERGGSSPYAIAKFLSEKYKSDLPPVFKKKLNVQLRNLTNSGKLTKVKGSYKL

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
341			16	83	0.994512
342		83	16		0.994512
344	83			16	0.994512
348		16	83		0.994512
350		16		83	0.994512
352		16		83	0.994512
353	16	83			0.994512
361	85		14		0.993533
363	85	14			0.993533
367	14		85		0.993533
369		85		14	0.993533
370		85		14	0.993533
373	85		14		0.993533
374	85	14			0.993533
375	85			14	0.993533
378			85	14	0.993533
380	14		85		0.993533
382			85	14	0.993533
383		14	85		0.993533
384	14	85			0.993533
743		97	2		0.930363
747		1		95	0.999223
901	25			75	0.996473
1149	90		3		0.997073
1158	2	97			0.977151
1188	30		69		1.0
1201	8		91		0.999807
1206	12			87	0.992554
1207	16			83	0.994512
1211	60	40			1.0
1213	25	25		50	0.995533
1214	33		66		0.997452
1215	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain