SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15247

Length: 922 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene15247

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Superoxide dismutase [Cu-Zn] n=3 Tax=Pinaceae RepID=SODC_PINSY	-	-	97%
FL-Next	sp=Superoxide dismutase [Cu-Zn]; Pinus sylvestris (Scots pine).	-	-	91%
Blast2go	copper zinc-superoxide dismutase	-	-	92%

Source	ECs	Term	Type	e value	Identity
Blast2go	Superoxide dismutase.	EC:1.15.1.1	-	0.0	92%

Source	GOs	Term	Type	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	92%
Blast2go	superoxide metabolic process	GO:0006801	Biological Process	92%
Blast2go	metal ion binding	GO:0046872	Molecular Function	92%
Blast2go	superoxide dismutase activity	GO:0004784	Molecular Function	92%
Blast2go	cytoplasm	GO:0005737	Cellular Component	92%

Full-Lengther Next Prediction

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
401	33		66		0.997452
476		33		66	0.997452
684		16		50	1.0
887			25	75	0.996473
896	33		66		0.997452
916			33	66	0.997452
917	66		33		0.997452
919	33		33	33	0.997753

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain