SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15237

Length: 2031 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene15237
CGTCGTGACCTTGGCTGTCACTCAAGATCATATCACCACTAACTCTCCGATACAAACAAGGAGTGAAGCACGAACTAAAACTGGCTCGCTGCACGCATTTCACCCAAATTATCATATTTTCAACTAATGCTGGCAATTTTCTTCTGTGAGCACAGTTTTTTTTTCTTCTGAGGTTGGGCTCCAAAACGTTGCTGGGGTTTGATCCAATAACCTGTAGGCTGTAATTAGCATCAGCAGCAATCAAGGTACCTGAAAGCCATGGCTGCTGCAACTGCTTCTGGGCTTCAAGTAGCTAGAGCCGCACTTTACTCATCTCAGTCTCCTTCAGCCCCGAGAAGCGCCCGCTCAGGAGTTTGTAATCCGGCACCCAATATCTCATTTTCTTCATCTCGACGGACCTATCTGCATTCCTCTTCTTTTCTGCCCTCTACTTTGCAGCTGTCTAGGACCATTAAAACAGAGGCAGTTAAGCTCAGCAGAGGATCTACAAAGATTCAGGCTGTTGCCAATGATAACGGCGCTCCCTCTGGACTTTCCATTGATTTGAGAGGGAAAAGAGCATTTATTGCTGGAATAGCAGATGACAATGGATATGGTTGGGCCATAGCAAAGTCCCTTGCTGCTGCTGGTGCAGAAATTCTTGTTGGCACTTGGGTTCCGGCTCTGAACATATTTGAAACCAGCTTGAAACGAGGCAAGTTTGATGAATCACGTGTGCTGCCAAATGGTTCTATGATGGAGATCTCTAAGATCTATCCTCTGGATGCTGTTTATGATACTCTCGAGGATGTTCCTGAAGACGTAAAAAAAAAAAAAAGGAAGCAGGGAGCCTCAAATTGGACAGTTCAGGAAGTTGCAGAGTCTGTAAAACAAGACTTTGGAAGCATTGATATTCTTGTGCACTCACTTGCAAATGGTCCAGAGGTCAGTAAACCTCTTCTTGAGACATCAAGGCAAGGGTACCTTGCAGCTGTTTCAGCCTCGAGTTATTCTTTTGTCTCATTGCTGAAGTACTTTATACCTATAATGAATCCTGGTGGGTCCACAATATCTCTCACATATATTGCATCAGAAAGGATCATTCCAGGATACGGTGGAGGAATGAGCTCTGCAAAAGCTGCTCTGGAAAGTGACACCAAGGTGCTTGCTTTTGAAGCTGGAAGACGCTACAACGTAAGAGTTAATACAATTTCAGCAGGTCCCTTGAGAAGCAGAGCTGCAAAGGCAATTGGATTTATAGATACCATCATTGAATACTCAATGGCAAATGCTCCCTTGCAAAAGGATTTGCTAGCTGATGAGATTGGGAATGCTGCAGCATTTTTAGCTTCACCATTAGCCTCTGCAATAACTGGCACAGTTGCATACGTTGACAATGGGTTGCATGCTATGGGAGTTGCAGTGGATAGTCCAGCCTTTGCTGAACTTGCAATACCACAAACAGAAAAAAGCAGGACTCCAGCATGATACTGTTAGCAAACAAGTCATGAAGTCTATCTGTCACAGGTTGTCACATAACAAGTGACCGGTGCCTTTCAAGTGGAATCTGGGTAGTCTCTAGTTATGATAGAGTTATTTGATTAAATGCTTTAGTCCAGTAAGGCAGTTTGGTTGTTAACAGAAACCCTAAACATTGAGCATTGAGGAATGTAAGGTCCCTCCTCACTAAGAAAGGCTGTTCAGAAATCAGTGGATTCATGGAGGAATTTTAGAGAGGTATAATTCAGGTTAATTGAAGGCATCTTTGCATATGTTGACTCTCCTTATGGCAATTTAGAATAATGATCCACCAGATGGAGGGGTTTCATCTCCACTTAATCTGAAGAGACTGTTAAAGAGGTTATGGAGCAAGCAAAAGAAAAGTTGCTGTAGCCTGTAGATATTGGCGTCTTACAATTTGTTTATTTGTTGTGTGGCCTATTATTTGGAAAATGTTTGCAATAGGTTTAAATTGTTAAAAATAGGTTCTGGCAATCATTTGGATACTTGTTGCTGGAATTTAAAGAAAAATAAATAAATTTTATTAAAAGC

Ace file of the UniGene sp_v1.1_unigene15237

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	enoyl-[acyl-carrier-protein] reductase (EC:1.3.1.10); K00208 enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9]	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	enoyl-acp reductase	-	-	89%

Source	ECs	Term	Type	e value	Identity
Blast2go	Enoyl-[acyl-carrier-protein] reductase (NADH).	EC:1.3.1.9	-	0.0	89%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Fatty acid biosynthesis	00061		0.0	89%
Blast2go	Metabolic pathways	01100		0.0	89%

Source	ECs	Term	Type	e value	Identity
AutoFact	Enoyl-[acyl-carrier-protein] reductase (NADH).	EC:1.3.1.9	-	0.0	73%

Source	KEGGs	Term	Type	e value	Identity
AutoFact	Fatty acid biosynthesis	00061		0.0	73%
AutoFact	Metabolic pathways	01100		0.0	73%

Source	GOs	Term	Type	Identity
Blast2go	fatty acid biosynthetic process	GO:0006633	Biological Process	89%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	89%
Blast2go	binding	GO:0005488	Molecular Function	89%
Blast2go	enoyl-[acyl-carrier-protein] reductase (NADH) activity	GO:0004318	Molecular Function	89%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Glucose/ribitol dehydrogenase	IPR002347	-	0.0	89%
Blast2go	NAD(P)-binding domain	IPR016040	-	0.0	89%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NYW1

Fln msg:

Fln protein: MAAATASGLQVARAALYSSQSPSAPRSARSGVCNPAPNISFSSSRRTYLHSSSFLPSTLQLSRTIKTEAVKLSRGSTKIQAVANDNGAPSGLSIDLRGKRAFIAGIADDNGYGWAIAKSLAAAGAEILVGTWVPALNIFETSLKRGKFDESRVLPNGSMMEISKIYPLDAVYDTLEDVPEDVKKKKRKQGASNWTVQEVAESVKQDFGSIDILVHSLANGPEVSKPLLETSRQGYLAAVSASSYSFVSLLKYFIPIMNPGGSTISLTYIASERIIPGYGGGMSSAKAALESDTKVLAFEAGRRYNVRVNTISAGPLRSRAAKAIGFIDTIIEYSMANAPLQKDLLADEIGNAAAFLASPLASAITGTVAYVDNGLHAMGVAVDSPAFAELAIPQTEKSRTPA*

Protein Length: 404

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGATCATATCACCACTAACTCTCCGATACAAACAAGGAGTGAAGCACGAACTAAAACTGGCTCGCTGCACGCATTTCACCCAAATTATCATATTTTCAACTAATGCTGGCAATTTTCTTCTGTGAGCACAGTTTTTTTTTCTTCTGAGGTTGGGCTCCAAAACGTTGCTGGGGTTTGATCCAATAACCTGTAGGCTGTAATTAGCATCAGCAGCAATCAAGGTACCTGAAAGCC_-_ATGGCTGCTGCAACTGCTTCTGGGCTTCAAGTAGCTAGAGCCGCACTTTACTCATCTCAGTCTCCTTCAGCCCCGAGAAGCGCCCGCTCAGGAGTTTGTAATCCGGCACCCAATATCTCATTTTCTTCATCTCGACGGACCTATCTGCATTCCTCTTCTTTTCTGCCCTCTACTTTGCAGCTGTCTAGGACCATTAAAACAGAGGCAGTTAAGCTCAGCAGAGGATCTACAAAGATTCAGGCTGTTGCCAATGATAACGGCGCTCCCTCTGGACTTTCCATTGATTTGAGAGGGAAAAGAGCATTTATTGCTGGAATAGCAGATGACAATGGATATGGTTGGGCCATAGCAAAGTCCCTTGCTGCTGCTGGTGCAGAAATTCTTGTTGGCACTTGGGTTCCGGCTCTGAACATATTTGAAACCAGCTTGAAACGAGGCAAGTTTGATGAATCACGTGTGCTGCCAAATGGTTCTATGATGGAGATCTCTAAGATCTATCCTCTGGATGCTGTTTATGATACTCTCGAGGATGTTCCTGAAGACGTAAAAAAAAAAAAAAGGAAGCAGGGAGCCTCAAATTGGACAGTTCAGGAAGTTGCAGAGTCTGTAAAACAAGACTTTGGAAGCATTGATATTCTTGTGCACTCACTTGCAAATGGTCCAGAGGTCAGTAAACCTCTTCTTGAGACATCAAGGCAAGGGTACCTTGCAGCTGTTTCAGCCTCGAGTTATTCTTTTGTCTCATTGCTGAAGTACTTTATACCTATAATGAATCCTGGTGGGTCCACAATATCTCTCACATATATTGCATCAGAAAGGATCATTCCAGGATACGGTGGAGGAATGAGCTCTGCAAAAGCTGCTCTGGAAAGTGACACCAAGGTGCTTGCTTTTGAAGCTGGAAGACGCTACAACGTAAGAGTTAATACAATTTCAGCAGGTCCCTTGAGAAGCAGAGCTGCAAAGGCAATTGGATTTATAGATACCATCATTGAATACTCAATGGCAAATGCTCCCTTGCAAAAGGATTTGCTAGCTGATGAGATTGGGAATGCTGCAGCATTTTTAGCTTCACCATTAGCCTCTGCAATAACTGGCACAGTTGCATACGTTGACAATGGGTTGCATGCTATGGGAGTTGCAGTGGATAGTCCAGCCTTTGCTGAACTTGCAATACCACAAACAGAAAAAAGCAGGACTCCAGCATGA___TACTGTTAGCAAACAAGTCATGAAGTCTATCTGTCACAGGTTGTCACATAACAAGTGACCGGTGCCTTTCAAGTGGAATCTGGGTAGTCTCTAGTTATGATAGAGTTATTTGATTAAATGCTTTAGTCCAGTAAGGCAGTTTGGTTGTTAACAGAAACCCTAAACATTGAGCATTGAGGAATGTAAGGTCCCTCCTCACTAAGAAAGGCTGTTCAGAAATCAGTGGATTCATGGAGGAATTTTAGAGAGGTATAATTCAGGTTAATTGAAGGCATCTTTGCATATGTTGACTCTCCTTATGGCAATTTAGAATAATGATCCACCAGATGGAGGGGTTTCATCTCCACTTAATCTGAAGAGACTGTTAAAGAGGTTATGGAGCAAGCAAAAGAAAAGTTGCTGTAGCCTGTAGATATTGGCGTCTTACAATTTGTTTATTTGTTGTGTGGCCTATTATTTGGAAAATGTTTGCAATAGGTTTAAATTGTTAAAAATAGGTTCTGGCAATCATTTGGATACTTGTTGCTGGAATTTAAAGAAAAATAAATAAATTTTATTAAAAGC

Fln Alignment:

sp_v1.1_unigene15237___MAAATASGLQVARAALYXXXXXXXXXXXXXGVCNPAPNIXXXXXXXXXXXXXXXLPSTLQLSRTIKTEAVKLSRGSTKIQAVANDNGAPSGLSIDLRGKRAFIAGIADDNGYGWAIAKSLAAAGAEILVGTWVPALNIFETSLKRGKFDESRVLPNGSMMEISKIYPLDAVYDTLEDVPEDVKKKKRKQGASNWTVQEVAESVKQDFGSIDILVHSLANGPEVSKPLLETSRQGXXXXXXXXXXXXXXXXKYFIPIMNPGGSTISLTYIASERIIPGYGGGMSSAKAALESDTKVLAFEAGRRYNVRVNTISAGPLRSRAAKAIGFIDTIIEYSMANAPLQKDLLADEIGNXXXXXXXXXXXXITGTVAYVDNGLHAMGVAVDSPAFAELAIPQTEKSRTPA
A9NYW1_______________MAAATASGLQLARAALCSSPSASAPITVRSGVCNLAPIISFASSRGIHRQSSPFLHSTLQLSRTIKTETVKLSRGPTEIRAVANDNGAPSGLSIDLRGKRAFIAGIADDNGYGWAIAKSLAAAGAEILVGTWVPALNIFETSLKRGKFDESRVLPNGSMMEISKIYPLDAIYDTLEDVPEDVKTNKRYAGASNWTVQEVAESVKQDFGSIDILVHSLANGPEVGKPLLETSRKGYLAAVSASSYSFVSLLKHFIPIMNPGGSTISLTYIASERIIPGYGGGMSSAKAALESDTRVLAFEAGRRYNIRVNTISAGPLRSRAARAIGFIDTIIEYSMANAPLQKDLLADEIGNAAAFLASPLASAITGTVAYVDNGLHAMGVGVDSPAFSELAMPQAEKRKTPA

SNPs (tot: 5)

Position	C %	G %	T %	Probability
431		40	60	1.0
474	50		50	1.0
1524		94	5	0.998397
1765	18	81		0.999994
1938		12	87	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain