SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15233

Length: 996 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene15233

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Thioredoxin H-type n=5 Tax=Picea RepID=TRXH_PICMA	-	-	88%
FL-Next	sp=Thioredoxin; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	thioredoxin h	-	-	79%

Source	GOs	Term	Type	Identity
Blast2go	cell redox homeostasis	GO:0045454	Biological Process	79%
Blast2go	electron transport chain	GO:0022900	Biological Process	79%
Blast2go	glycerol ether metabolic process	GO:0006662	Biological Process	79%
Blast2go	transport	GO:0006810	Biological Process	79%
Blast2go	electron carrier activity	GO:0009055	Molecular Function	79%
Blast2go	protein disulfide oxidoreductase activity	GO:0015035	Molecular Function	79%
Blast2go	cytoplasm	GO:0005737	Cellular Component	79%

Full-Lengther Next Prediction

SNPs (tot: 47)

Position	A %	C %	G %	T %	Probability
324	15		84		0.999986
611		49		50	1.0
619		52		47	1.0
633	53	46			1.0
645	58		41		1.0
648		41		58	1.0
675	96	3			0.999986
686	70		30		1.0
687		11		88	1.0
697		71		28	1.0
708		27	72		1.0
711	1	42	56		1.0
719	1	1		90	0.999935
720	4	95			0.995881
721	2	12		84	1.0
722	76	23			1.0
723	9	3		87	1.0
724	6	93			0.999364
726	34		15		1.0
731		11		50	1.0
732	53			46	1.0
734	50		38	11	1.0
736	54		45		1.0
738			54	45	1.0
740			45	54	1.0
741	45		54		1.0
742	54			45	1.0
757	42	57			1.0
758	19	9	71		1.0
762	50		50		1.0
768		38		61	1.0
771		88		11	0.999937
783		68		31	1.0
786			73	26	1.0
787		73	26		1.0
788	76			23	1.0
789	76		23		1.0
792			78	21	1.0
794	76		23		1.0
795		53	23	23	1.0
796	23	76			1.0
797	76		23		1.0
798	70		30		1.0
805		80		20	0.999996
835			88	11	0.923564
840	50		50		1.0
846	14			85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain