SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15229

Length: 660 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene15229 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	-	-	2.0e-27	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%
Blast2go	protease inhibitor seed storage lipid transfer protein family protein	-	-	0.0	71%

Source	GOs	Term	Type	Identity
Blast2go	lipid transport	GO:0006869	Biological Process	71%
Blast2go	lipid binding	GO:0008289	Molecular Function	71%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	71%

Source	InterPros	Term	Type	Identity
Blast2go	Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor	IPR003612	-	71%
Blast2go	Plant lipid transfer protein/hydrophobic protein helical domain	IPR013770	-	71%
Blast2go	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	IPR016140	-	71%

Full-Lengther Next Prediction

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
413	3		96		0.989722
637	6	91		1	1.0
638	95	5			0.999992
639	96	3			0.988113
645	87	10			1.0
647	5	13		80	1.0
653	3	78			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain