SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15221

Length: 1505 nt

Origin of reads: Biogeco_1 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene15221 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	2.0e-12	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	73%
Blast2go	unknown [Picea sitchensis]	-	-	8.05761e-12	82%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	8.05761e-12	82%

Source	GOs	Term	Type	e value	Identity
Blast2go	auxin biosynthetic process	GO:0009851	Biological Process	8.05761e-12	82%
Blast2go	protein phosphorylation	GO:0006468	Biological Process	8.05761e-12	82%
Blast2go	ATP binding	GO:0005524	Molecular Function	8.05761e-12	82%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	8.05761e-12	82%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NYQ4

Fln msg: query STOP codon is far from subject stop. Distance to subject end: 24 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 82 - 318

Fln protein: THGGR*D**ARDIWSVGLSLLEYFILLGISHFWRPGRKHTDSAHFVTGTHQLLLLQRLMQRLLSCWVTPSSSSAPSRDLPY*

Protein Length: 83

Fln nts: ATGGGGGAGAGGCAGAGGTAACACATCAATTATTATTGAATCAAGACAATTCTGCCCAGGGATCACAGTTAAATGTGGCATCCGACTTGATGACAGATCTTGAGCATCTTTGGAGAGAGGCGGCAATATAGATCCCTACTTTGCGCCTAAATGGAGAGAAACAGGGCATGCCCATATCATGGTTGGATCTGGGCGGTGCTCGTCATCGAATAATGGCCACTAGTAGCGTTTTATTCTGCAGATCCTGCAGTCTCTTGGTTTTTTAAGTCAAATCCTCTGCATCCATGATCATTTTAGGCGGCAGCATAGATCCCTCGTTCCACAGAAATCCAGAGAAACCGGGCATGCCTTTTGAATATGGCCGGCGTCGAAGCATTTTTCTGGAGGAGAATTTCCCTGTGAAGCTGTTAAAAGATGGAATTAACGGCGACCCTTCCCTTACAGAGGGCGTAATTAAACCTTCGTATACGGTGCATAGGCTGGTGCTTGCTCCAGAATTGGTTTCTGCGTTGCGGTATCATTCATTTTACGCATCGGCTCGCAATGCAGCGACCATTCTATCTAAGGGCCGTAACCTTTCATCCTTCGGAGGTTAAGCATAGTACATCCAAGGGCCACAGCAACGCTCTTCAAGTGATTCATTATTTTATTGGAATCGGGAGGGTATTCCTTCCAGATGTTCGGGAATCGATTACTCAAACTTCACTGGGGCTACTGCCTATCCTCTGGCTCTCCAGGTCTCCAGGTGCCCTTCCATATTTTCGCGATACCATATATACTCGGATCGAATTTCCGGGTTTATATTTGGATTCAATATATTTGGTTTATATTGAATTTCTGGGTTATGTTGGATTCAAATTTTCTCTACATTCACATGTGGACTTGTAACTTAATGGCTAAAATTTTCTCCAGAGTCACATCCAGTGGACAAAATAATATTATGTAGGACTTTTTTAACAATAGATTTGTCAAGGCCATCAAAATATGAGCCCAGAGAGATTCGACCCCTAGACCCATGGTGGAAGGTAAGACTGATAGGCGCGCGATATATGGAGCGTGGGGTTGAGTCTGCTGGAGTATTTTATTTTATTGGGCATTTCCCATTTCTGGCGGCCGGGCAGAAAACATACTGATAGTGCGCATTTTGTTACGGGTACCCATCAGCTCCTCCTCCTCCAACGACTGATGCAGAGGCTGCTTAGCTGTTGGGTCACCCCTTCGTCCTCTTCAGCTCCCTCCAGAGACCTTCCATACTGA___TGCAGAGGCTCAGTATATAATCCAATCTCACCCACCCCCAAATTAGCCTGTACATAAAACCCCATAACTATTTTTTATTCATAATTAAGTCAATTTTCTCAAATTCTCGGTTCTCTCTGTATTTAATCATTGTTAAATATTTATTTTATGATATATTTTTCTGGCATTAAGATTTGTTAAGGTCATCAAAATATGTATATAAAAGAGAATTTAACAATGGTTAATGATCATATATTGTTCACCTCTTT

Fln Alignment:

sp_v1.1_unigene15221___MSPERFDP*THGGR*D**ARDIWSVGLSLLEYFI
A9NYQ4_______________MSPERFDPETYGGRYDGYAGDIWSLGLSLLECYI

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
890		14		85	0.993533
1083		90		10	0.90298
1094			12	87	0.992554
1115	90	10			0.90298
1128		22	77		0.999999
1145		88		11	0.923564
1200		57	14	28	1.0
1212	14	85			0.993533
1235		28	71		1.0
1240	16		83		0.994512
1260		91		8	0.999807
1262			91	8	0.999807
1287	10	89			0.999919
1317		82	11		0.999919
1401	71		28		1.0
1408		30	69		1.0
1416	10		90		0.90298
1422	66		33		1.0
1451	11	33		55	1.0
1453		25	75		1.0
1454		25	75		1.0
1455		25	75		1.0
1458			75	25	1.0
1483		16	83		0.994512
1484	83	16			0.994512
1485		16		83	0.994512
1486	16		83		0.994512
1506	25	75			0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
329	341	GGA GGA GGA GGA G	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain