SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15219

Length: 2121 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene15219
ATGGGGGTCGTGACCTTGGCTGTGACTTAGGGTTTTGGGGACATCGCGTGTTTTGGCCCCTTTCACACTGGCAGGTAAGAAGCTCTGGGTATAATAGAAATTTGAAGTGATATATTCTCGAACGTGTCAAGCGATCCGGGGGTACAGGCCATTGAGTGCATCCTGACCGTTGGATTCGCGTACCCTCCTCTTTTCTCCTCTATATTGTTGCCTCTCCGCTCTCTTTTCATGGTGACTTCGCGTCTGCTTCATTTCTTCGTTTCAGATAGCAAATGTTGAAGGTTCACTGCGCGTAGATAGTCGGCGGTGGCAGCTTGTTTATCAGTTACCCATAAATTTTCTTAAAGCTCGTAAACAAGATGGCCAAAGGAAAGAACAAGAAGAGATCACGCGATGGTCAGCAAGTAGCTGGGGAAGCTGACAAAGAAGCAGCACCAACTAATGTTGCTGATAAGACTGTTAAAAAGGAGACGGTCGTAAAGGAGAACGAACCCAAGGCTTCAGCAGAAGCTCCCGTGTCAAAGGTTGATCAAAATAAGAAGAAAAAACAAGTCCAGGAAGCAAACAACGAAGATGACAGTGGCAAAGATAGGTTTGCCGGCTTGATTTTTATGTGTAATTCTCAAACTAAGCAGGAGTGTTTCCGATACAAAGTGTTTGGCTTGCCACCAGCCAAAAAGGAGCTTGTAGAAAAGGTCAAGCCCGGAATGAAGCTCTTCTTGTATGATTTTGACCTTAGACTGATGTATGGTATATACAAGGCGGCTTCTGCTGGAGGAATGAATCTGGAGCCAGATGCTTTCCGGAGTTCTAAAAGGCCATTTCCCGCACAGGTGCGGTTCCGTATTCAAAGGGATTGCTTGCCGCTTTCTGAAGACATATTCAAGAAAGCAATCAAAGATAACTATGATGGGAAGAACAAGTTTCGGTTTGAACTCAATCCTCAACAGGTGAAAAAGCTTACGGAGCTCTTCCGACCTATACCGCAGTTTAGTTCTCGTCCTGAAATTCCGCGCATTCCTTTGGAGGCTCCCCCTCTTGAACCTAGAATTCAAGTTGAGCTTCAGCGTTCTAGGGAGCTTCAATTCAGGGAGGAGATGATGAGGGAGGAAATGCTTAGAGAGGAACTGCGTCGAGAGGAACTACGTCGAGAGGAGCTCCTAAGAGAGGAACTGCGCAGAGAGGAATTACGCAGAGAGGAACTGCGTCGAGAAGAAATGCGCCGAGAGGAATTGCTGAGAGAAGATATGCTACGCTATCAGGAGGAAGCCAGACGTGCAGCACGTACTGATTATCCTCAGGCTCCTTTAACTGGATATGGTGTTGATCCTGCTATAGCTGAGAGAGAGTTATTACGATATGGAGCTGGAAGGGATTATATTCCTCAGGCTCCTCTTCAAGCACAAGATCCATATGCGAGTCTACAATCACAAGATCCATATGCGACCCTGCGAGCTCAAGATCCATATGGTAGTCTATTACCAAAGCAACCTGAGTTAGATTATCAGAGCCGGGTTGATCCAAGCATTGAATCTTTGTATCGTCAGAGGTTGGAGGCGGATTATCGAAAGCCGTTAGGTGATGTGCCAAATGAAAGCTACTATGCGGACCCTCTTCTGCAAAGGGATTTACGTCGACCTGATTTAGGAGCCTCTGTTGCTGGAGGCCCTCCTGCATATCTCGGATCATCTTCGCTGTATCGCTAGATTTATAAGCTGCTGAATTTTGAATCATAGGCTTACTATAGTTTCATTCCATAGTTTTAGTTATGAATCAGTCTTAATAACTGATCTAATTGGTACGGTACTAGACTATTTGAGATTATTGCGTAATTTTGTTCTGAACACCATTATGATTTTCAGTTTGGAAACTGCATATTTGATATGGTGGATCGAATTATAGAAGTCTTCATTTAGAATTGTGATATGATAGATGTATTGTTATCACAAGGGATATTGTGGGAGCTTCTTGTTGAGAAAAATGCATAATTATAGTGGTTGTGATTCCCGTGTAATATTCATTGGAAATTGCATTATTAGGCAGTAGATTAGAATCTTGCTAGCAATTTTTGTTGGGAAATATTCCGTGTGCACAATTCTGGAAAGTTCATTGAAGCCGTCA

Ace file of the UniGene sp_v1.1_unigene15219 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Dev_Cell_Death multi-domain protein	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	78%
Blast2go	protein	-	-	72%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Development/cell death domain	IPR013989	-	0.0	72%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LNW7

Fln msg:

Fln protein: MAKGKNKKRSRDGQQVAGEADKEAAPTNVADKTVKKETVVKENEPKASAEAPVSKVDQNKKKKQVQEANNEDDSGKDRFAGLIFMCNSQTKQECFRYKVFGLPPAKKELVEKVKPGMKLFLYDFDLRLMYGIYKAASAGGMNLEPDAFRSSKRPFPAQVRFRIQRDCLPLSEDIFKKAIKDNYDGKNKFRFELNPQQVKKLTELFRPIPQFSSRPEIPRIPLEAPPLEPRIQVELQRSRELQFREEMMREEMLREELRREELRREELLREELRREELRREELRREEMRREELLREDMLRYQEEARRAARTDYPQAPLTGYGVDPAIAERELLRYGAGRDYIPQAPLQAQDPYASLQSQDPYATLRAQDPYGSLLPKQPELDYQSRVDPSIESLYRQRLEADYRKPLGDVPNESYYADPLLQRDLRRPDLGASVAGGPPAYLGSSSLYR*

Protein Length: 450

Fln nts: ATGGGGGTCGTGACCTTGGCTGTGACTTAGGGTTTTGGGGACATCGCGTGTTTTGGCCCCTTTCACACTGGCAGGTAAGAAGCTCTGGGTATAATAGAAATTTGAAGTGATATATTCTCGAACGTGTCAAGCGATCCGGGGGTACAGGCCATTGAGTGCATCCTGACCGTTGGATTCGCGTACCCTCCTCTTTTCTCCTCTATATTGTTGCCTCTCCGCTCTCTTTTCATGGTGACTTCGCGTCTGCTTCATTTCTTCGTTTCAGATAGCAAATGTTGAAGGTTCACTGCGCGTAGATAGTCGGCGGTGGCAGCTTGTTTATCAGTTACCCATAAATTTTCTTAAAGCTCGTAAACAAG_-_ATGGCCAAAGGAAAGAACAAGAAGAGATCACGCGATGGTCAGCAAGTAGCTGGGGAAGCTGACAAAGAAGCAGCACCAACTAATGTTGCTGATAAGACTGTTAAAAAGGAGACGGTCGTAAAGGAGAACGAACCCAAGGCTTCAGCAGAAGCTCCCGTGTCAAAGGTTGATCAAAATAAGAAGAAAAAACAAGTCCAGGAAGCAAACAACGAAGATGACAGTGGCAAAGATAGGTTTGCCGGCTTGATTTTTATGTGTAATTCTCAAACTAAGCAGGAGTGTTTCCGATACAAAGTGTTTGGCTTGCCACCAGCCAAAAAGGAGCTTGTAGAAAAGGTCAAGCCCGGAATGAAGCTCTTCTTGTATGATTTTGACCTTAGACTGATGTATGGTATATACAAGGCGGCTTCTGCTGGAGGAATGAATCTGGAGCCAGATGCTTTCCGGAGTTCTAAAAGGCCATTTCCCGCACAGGTGCGGTTCCGTATTCAAAGGGATTGCTTGCCGCTTTCTGAAGACATATTCAAGAAAGCAATCAAAGATAACTATGATGGGAAGAACAAGTTTCGGTTTGAACTCAATCCTCAACAGGTGAAAAAGCTTACGGAGCTCTTCCGACCTATACCGCAGTTTAGTTCTCGTCCTGAAATTCCGCGCATTCCTTTGGAGGCTCCCCCTCTTGAACCTAGAATTCAAGTTGAGCTTCAGCGTTCTAGGGAGCTTCAATTCAGGGAGGAGATGATGAGGGAGGAAATGCTTAGAGAGGAACTGCGTCGAGAGGAACTACGTCGAGAGGAGCTCCTAAGAGAGGAACTGCGCAGAGAGGAATTACGCAGAGAGGAACTGCGTCGAGAAGAAATGCGCCGAGAGGAATTGCTGAGAGAAGATATGCTACGCTATCAGGAGGAAGCCAGACGTGCAGCACGTACTGATTATCCTCAGGCTCCTTTAACTGGATATGGTGTTGATCCTGCTATAGCTGAGAGAGAGTTATTACGATATGGAGCTGGAAGGGATTATATTCCTCAGGCTCCTCTTCAAGCACAAGATCCATATGCGAGTCTACAATCACAAGATCCATATGCGACCCTGCGAGCTCAAGATCCATATGGTAGTCTATTACCAAAGCAACCTGAGTTAGATTATCAGAGCCGGGTTGATCCAAGCATTGAATCTTTGTATCGTCAGAGGTTGGAGGCGGATTATCGAAAGCCGTTAGGTGATGTGCCAAATGAAAGCTACTATGCGGACCCTCTTCTGCAAAGGGATTTACGTCGACCTGATTTAGGAGCCTCTGTTGCTGGAGGCCCTCCTGCATATCTCGGATCATCTTCGCTGTATCGCTAG___ATTTATAAGCTGCTGAATTTTGAATCATAGGCTTACTATAGTTTCATTCCATAGTTTTAGTTATGAATCAGTCTTAATAACTGATCTAATTGGTACGGTACTAGACTATTTGAGATTATTGCGTAATTTTGTTCTGAACACCATTATGATTTTCAGTTTGGAAACTGCATATTTGATATGGTGGATCGAATTATAGAAGTCTTCATTTAGAATTGTGATATGATAGATGTATTGTTATCACAAGGGATATTGTGGGAGCTTCTTGTTGAGAAAAATGCATAATTATAGTGGTTGTGATTCCCGTGTAATATTCATTGGAAATTGCATTATTAGGCAGTAGATTAGAATCTTGCTAGCAATTTTTGTTGGGAAATATTCCGTGTGCACAATTCTGGAAAGTTCATTGAAGCCGTCA

Fln Alignment:

sp_v1.1_unigene15219___MAKGKNKKRSRDGQQVAGEADK-EAAPTNVADXXXXXXXXXXENEPKASAEAPXXXXXXXXXXXXXQEANNEDDSGKDRFAGLIFMCNSQTKQECFRYKVFGLPPAKKELVEKVKPGMKLFLYDFDLRLMYGIYKAASAGGMNLEPDAFRSSKRPFPAQVRFRIQRDCLPLSEDIFKKAIKDNYDGKNKFRFELNPQQVKKLTELFRPIPQFSSRPEIPRIPLEAPPLEPRIQVELQRSRELQFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYQEEARRAARTDY--PQAPLTGYGVDPAIAERELLRYGAGRDYIPQAPLQAQDPYASLQSQDPYATLRAQDPYGSL---------LPKQ------PELDYQSRVDPSIESLYRQRLEADYRKPLGDVPNESYYAXXXXXXXXXXXXLGASVAGGPPAYLGSSSLYR
B8LNW7_______________MARGRNRKRARDGQQVDGGAEKKEAAPTNVGEKIVKKETPVKEKKPKVTADPTGPKVDQNKK-----KKQDEDGNGKDNFAGLIFMCNSQTKQECFRYRVFGLPPAKKDLVEKVKTGMKLFLYDFDLRLMYGIYKAASGGGMNLEPDAFRGSKRPFPAQVRFRIQKDCLPLSEDIFKKAIKDNYDGKNKFRFELNAQQVKKLSELFRPVPRFDSRPEIPRNPVDAPPLEPRGQVDLHRSREHQFREELLREELLREELRREELRREELRREELLREELRREELRREELRREEIMRDDILRYQEETRRAARAEYNIPQAPLAGYGADPAISERDLLRYGAGRDYIPQAPLQAQDPYANLQTQDPYANLRAQDPYASLRVQDAYASALPKQLPRDQLPELDYQSRLDPSIESLYRQRLDVDYRKPIVDVATESYYADPLLQRDLRRPELGASVAGAPPAYLGASSLYR

SNPs (tot: 102)

Position	A %	C %	G %	T %	Probability
739		2	97		0.97849
740	97	2			0.97849
742	2			97	0.97849
743	97		2		0.979771
750		95	4		0.999989
1316		92	8		0.999718
1317	12	88			1.0
1321	92	8			0.999718
1325	91	8			0.999766
1326	8			91	0.999766
1327	8	91			0.999766
1328			8	91	0.999766
1330			91	8	0.999766
1332	8			91	0.999766
1334		91	8		0.999766
1443		2		79	1.0
1489		10	89		1.0
1491	10			89	1.0
1526	97	2			0.941605
1536	2			97	0.941605
1537		2		97	0.941605
1574		2		60	1.0
1643		3		96	0.991825
1656		2		93	0.976545
1680		2		97	0.969538
1681		2		97	0.969538
1766	2		97		0.910981
1808			97	2	0.936149
1809		97	2		0.936149
1810	2			97	0.936149
1812		97		2	0.936149
1813		97	2		0.936149
1816	2	97			0.936149
1820	2		97		0.936149
1822		97	2		0.936149
1824	95	4			1.0
1845	96	0			0.999925
1847	21	77			1.0
1860	95	2	0		0.999759
1862	95	1	2		0.998474
1863		95		4	1.0
1866	90		7	2	1.0
1867	1		92	5	1.0
1868	94		5		1.0
1870	97	0	2		0.980446
1871	0	0	7	90	1.0
1872		7	92		1.0
1873	97	2			0.999997
1875	2		96	0	0.999979
1878		2	97		0.999998
1888		45	48		1.0
1889	46	48			1.0
1890	23	43	5		1.0
1891	5	43		23	1.0
1892	74	3	10	12	1.0
1893	5	3	10	81	1.0
1894		2	66		1.0
1895	58	2		5	1.0
1896	55	11			1.0
1897	58	8		2	1.0
1898	80	8	8	2	0.999995
1899	25	13	55	5	1.0
1900	55	11		32	1.0
1901	9	3	84	3	0.999999
1903		18	81		1.0
1904	28	46	9	15	1.0
1905			87	12	1.0
1906		37	46	3	1.0
1907	68	18	9	3	1.0
1908	28	3	56	3	1.0
1910		9	87	3	1.0
1911	3	12	83		1.0
1912		78		21	1.0
1913	75	25			1.0
1915		82	14	3	1.0
1916	53	3	39	3	1.0
1917	77	3		18	1.0
1918		37	7	55	1.0
1919	74	3	18		1.0
1920		18		81	1.0
1921	71			4	1.0
1924		27	72		1.0
2009	85			14	0.993533
2010			14	85	0.993533
2013		85	14		0.993533
2016	14			85	0.993533
2017			14	85	0.993533
2019	85	14			0.993533
2022			14	85	0.993533
2023			14	85	0.993533
2028		14		85	0.993533
2029			14	85	0.993533
2031		14		85	0.993533
2032	85		14		0.993533
2058		16	83		0.994512
2059	83	16			0.994512
2060	83	16			0.994512
2062			83	16	0.994512
2086	75	25			0.996473
2087	75	25			0.996473
2089	75			25	0.996473
2094	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain