SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15209

Length: 1747 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene15209

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Putative peroxidase n=1 Tax=Solanum tuberosum RepID=Q948Z3_SOLTU	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	peroxidase 73	-	-	78%

Source	ECs	Term	Type	e value	Identity
Blast2go	Peroxidase.	EC:1.11.1.7	-	0.0	78%

Source	KEGGs	Term	Identity
Blast2go	Phenylalanine metabolism	00360	78%
Blast2go	Methane metabolism	00680	78%
Blast2go	Phenylpropanoid biosynthesis	00940	78%
Blast2go	Biosynthesis of phenylpropanoids	01061	78%
Blast2go	Metabolic pathways	01100	78%
Blast2go	Biosynthesis of secondary metabolites	01110	78%

Source	GOs	Term	Type	Identity
Blast2go	response to salt stress	GO:0009651	Biological Process	78%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	78%
Blast2go	response to oxidative stress	GO:0006979	Biological Process	78%
Blast2go	heme binding	GO:0020037	Molecular Function	78%
Blast2go	peroxidase activity	GO:0004601	Molecular Function	78%
Blast2go	protein binding	GO:0005515	Molecular Function	78%

Source	InterPros	Term	Type	Identity
Blast2go	Plant peroxidase	IPR000823	-	78%
Blast2go	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	78%
Blast2go	Haem peroxidase	IPR010255	-	78%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NMN9

Fln msg: Overlapping hits, possible frame ERROR between 870 and 851,

Fln protein: MGSKKSARKPLELAGFVIWVLLGLCVSNGSAQLSENFYAKICPNVESIVRNVVSQKFTQTFVTVPGTLRLFFHDCFVEGCDASVIIQSTSNNTAEKDFSDNLSLAGDGFDTVIKAKQAVEKVCPNSVSCADILTMAARDVVALAGGPQFNVELGRRDGLISQASRVNGNLPKASFTLNQLNxxxxxxxxLSQTDMVALSGAHTLGFSHCNQFANRIYSFSASTPVDPSLNASYATQLQQMCPQNVDPTIAVNIDPTTPRKFDNVYYQNLQSGKGLFSSDEVLYTDLRTRNAVNKFAQSSDTFNTAFVSAMRNLGRVDVKTGFQGEIRQDCSRFN*

Protein Length: 336

Fln nts: ATGGGGACACTTGCTTGTTTTTAATTACAAAGCCGTCTTTGCAAGCGTGGATACGCGTAAACaACTcTTGCAGATGGTATCtTATACATTTGCAAGAGTGGATCGAGATgGTTCATGTGACaTAGGGAGAATGcTGGGtTGTTATCCACCTAAATTTGACTCATGTTTTGTgTGATCCAaCCATTAGATTCCAGCCACCAGCCCCActCTTTTTCATTCATTGTTATATAGAGAGGTATGCAGGTTTGTGgGTacTACAGTAGGCCAGGGGCTCTTATCTTGTGAGTTtTCAGATAAGgTATTGTC_-_ATGGGTTCAAAAAAATCTGCTAGGAAGCCATTGGAATTGGCTGGATTCGTCATTTGGGTATTGTTAGGGCTGTGTGTAAGCAATGGATCAGCTCAACTTAGTGAGAATTTTTATGCAAAAATCTGTCCCAATGTTGAATCCATTGTAAGGAATGTTGTTTCTCAAAAGTTTACCCAGACATTTGTGACAGTTCCTGGCACATTACGACTCTTCTTCCATGATTGCTTTGTTGAGGGATGTGACGCCTCAGTGATCATTCAGTCTACATCAAACAACACTGCTGAGAAAGATTTTTCAGACAACTTGTCATTAGCTGGTGATGGATTTGATACTGTCATCAAGGCCAAGCAAGCCGTAGAGAAAGTGTGCCCCAACAGCGTGTCTTGTGCTGATATCCTAACCATGGCTGCCAGAGATGTTGTAGCATTGGCTGGAGGCCCACAATTCAATGTGGAGTTAGGGCGACGAGATGGATTGATATCCCAAGCCTCCAGAGTCAATGGAAACCTGCCAAAAGCTTCATTCACTCTCAACCAACTAAACxxxxxxxxxxxxxxxxxxxxxxxxTTGAGTCAAACAGACATGGTAGCTCTATCTGGAGCCCACACTCTGGGATTCTCTCACTGCAACCAATTTGCAAACAGAATCTACAGTTTCAGTGCTAGTACACCCGTGGATCCAAGTCTGAATGCGTCCTATGCTACTCAACTTCAACAGATGTGCCCTCAGAACGTGGACCCGACCATTGCTGTTAACATAGATCCCACAACTCCCCGCAAATTCGATAACGTTTATTACCAGAATTTACAGTCTGGGAAGGGGCTTTTCTCATCTGACGAGGTTCTATACACAGACCTGCGCACACGAAATGCTGTAAACAAATTTGCTCAGAGTTCAGATACGTTTAACACGGCCTTCGTGAGTGCCATGAGGAACTTGGGGCGTGTGGACGTGAAGACGGGATTTCAGGGCGAGATCAGACAAGATTGCAGCCGATTTAACTAA___TCCTACCGGACCTGCATTGCGTTGCATTTATTCTTTTGTATTTTCTATGGGAGTTAGTGGAACGAGACAATGGCAGTTGCTTCTTTCCTTTTCATTTCTCAATAATCCCCGCCGTCTGCTGGGGTAGGTGGTTTCTGTGTAGCGTTCATTCATTGCGTTAGGCTGTGCTCAAAAGACGTGCAATTACCATTGGGTTGTGCTCAAAAGACGTGCAATTACCATTAACTAATAAAGTATGGAAACCATACTTTATCCATTGGATTTTGAATGTTTGGCAATCATATAAAACTGAAGAACATGTTTTTTTAAACTATACTGTATAATGACATCATAGAACGGCAATGAGTTGGTGGTGTGGTTGTTCAACTGTATATTTCTGCATTGCTTCCTATTCCAATTCGGAAACCAATTCGGAATCCAGACAGTTGTATTGCAATA

Fln Alignment:

sp_v1.1_unigene15209___MGSKKSARKPLELAGFVIWVLLGLCVSNGSAQLSENFYAKICPNVESIVRNVVSQKFTQTFVTVPGTLRLFFHDCFVEGCDASVIIQSTSNNTAEKDFSDNLSLAGDGFDTVIKAKQAVEKVCPNSVSCADILTMAARDVVALAGGPQFNVELGRRDGLISQASRVNGNLPKASFTLNQLNxxxxxxxLSQTDMVALSGAHTLGFSHCNQFANRIYSFSASTPVDPSLNASYATQLQQMCPQNVDPTIAVNIDPTTPRKFDNVYYQNLQSGKGLFSSDEVLYTDLRTRNAVNKFAQSSDTFNTAFVSAMRNLGRVDVKTGFQGEIRQDCSRFN
A9NMN9_______________MGSKKSARKPLELAGFVVWVLLGLCVSKGSAQLKENFYAKICPNVESIVRNAVSQKFSQTFVTVPGTLRLFFHDCFVEGCDASVIIQSTSNNTAEKDFSDNLSLAGDGFDTVVKAKQAVEKVCPNTVSCADILTMAARDVVALAGGPQFNVELGRRDGLISQASRVSGNLPKASFTLNQLNxxxxxxxLSQTDMVALSGAHTLGFSHCNQISNRIYSFSASTPVDPSLNPSYATQLQQMCPKNVDPTIAINIDPTTPRQFDNVYYQNLQSGKGLFSSDEVLYTDLRTRNAVNTFAQSSGAFNTAFVNAMRNLGRVGVKTGFQGEIRQDCSRFN

SNPs (tot: 32)

Position	A %	C %	G %	T %	Probability
320	66		33		0.997452
330	71	28			1.0
332			71	28	1.0
333	71		28		1.0
343	71	28			1.0
344	71			28	1.0
345			28	71	1.0
347		28	71		1.0
348	28		71		1.0
352		28	71		1.0
356		85		14	0.993533
365			85	14	0.993533
398	85		14		0.993533
551		16		83	0.994512
554		16		83	0.994512
563		83		16	0.994512
586		83		16	0.994512
605	50		50		1.0
662		75		25	0.996473
800		33		66	0.997452
888		50		50	1.0
889	75		25		0.996473
891		25	75		0.996473
895		25	75		0.996473
900	75		25		0.996473
901			25	75	0.996473
905		25	75		0.996473
907			75	25	0.996473
934	75	25			0.996473
1233	23	76			1.0
1517	75		25		0.996473
1519	75		25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain