SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15202

Length: 1647 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene15202

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RING-H2 finger protein ATL1M, putative n=1 Tax=Ricinus communis RepID=B9T6E5_RICCO	-	-	6.0e-33	37%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	71%
Blast2go	ring-h2 finger protein	-	-	0.0	54%

Source	GOs	Term	Type	e value	Identity
Blast2go	zinc ion binding	GO:0008270	Molecular Function	0.0	54%
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	54%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PQ51

Fln msg:

Fln protein: MSSSHPAMDSYDNFKRHDNYYGDNLGDNASNYSRAMAIGSKIMIVAILLMFAVAFFAFGFLIYARYFLWRRGSSRRRRLEFVEQQDPPRLQRVGLSKSAIEAIPVFVYQSESHKEGLECAVCLCEFEENEKARQLPKCHHSFHIDCIDMWLQSHSTCPLCRSSALTDTAADSVVVLVSNEEAASGGASETNHQVSLPTVSEGNASVSMEPDLCPSCRHEEVLQSPNYPTHMLFWATQNRVSSLSNSVVFDQGAASTSRKTLDKIIIDIPRRMDSFSSPRLLCCDDRQMFSPNGQSLKSPSIRLRSFKRLLSKGKKVIPPSPDDGRNIHIEQTDSSESQG*

Protein Length: 341

Fln nts: GCATCACCGAGAACGCTTGTA_-_ATGTCCAGTTCGCATCCGGCCATGGATTCTTACGATAACTTCAAaCGGCACGATAACTATTACGGGGATAATcTAGGGGATAATGCAtCTAATTACTCGAgGGCGATGGCCATTGGCAGCAAAATCATGATTGTCGCCATTCTACTTaTGTTCGCGGTCGcTTTCTTCGCTTTCGGTTTCTTGATCTACGCtCGCTACTTCTTGTGGCGCAGGGGTTCTTCCCGACGgCGCCGTCTTGAATTTGTTGAACAGCAGGATCCCCCGAGGCTCCAAAGAGTCGGCCTCAGCAAGTCGGCTATAGAAGCGATTCCCGTGTTCGTCTATCAGTCGGAGAGTCACAAAGAGGGGCTTGAATGCGCCGTCTGTTTGTGCGAATTTGAGGAGAACGAGAAGGCGAGACAGCTCCCCAAATGCCACCACAGTTTCCACATCGATTGCATAGACATGTGGCTGCAATCGCACTCGACTTGTCCGCTGTGTCGATCCAGTGCCCTGACCGACACGGCCGCCGATTCTGTCGTGGTTCTAGTAAGCAACGAGGAGGCAGCGTCAGGGGGCGCCTCTGAAACAAATCATCAGGTGTCTCTGCCCACCGTTTCAGAGGGCAACGCATCGGTTTCCATGGAACCCGACCTCTGCCCTTCGTGCAGACATGAAGAGGTTTTGCAGTCTCCAAATTATCCCACCCACATGCTTTTCTGGGCAACCCAAAACAGGGTTTCTTCCCTGTCTAACTCCGTGGTCTTCGACCAAGGGGCGGCATCGACTTCTCGTAAAACCCTCGACAAAATCATCATTGATATACCCCGAAGAATGGACAGTTTTTCTTCTCCCAGGCTACTCTGCTGCGATGACCGACAGATGTTTTCACCAAATGGGCAATCGCTTAAATCCCCCAGCATTAGGCTCCGTTCATTCAAAAGGCTCTTAAGCAAAGGCAAGAAGGTCATTCCACCGAGTCCAGATGATGGTAGAAATATTCATATTGAGCAAACGGATTCATCCGAGAGCCAAGGATAG___TTGAAAGCTAGGGTTTATTGGTTTCTACTTCAATGAGCATTAGCATTGGAAGAACTGTATAAACATATTAGTCAGAGAGTTGATGCAAAACTTTGCCCTGCCAAGGATTGATTTTACAGCTGATATGGATGGTGAAGTACAGTGGCTGTATTCTCCATGAAACGAGGGATATGGCTTATCTCTGTGTCTAGTTGCGTCACAAGGTGATTCTGTGAAAGCCAAATATGTTTTATCCAAACTTGGGTTGCCTGTTGTTTCCGAGGAATCACTGGGAATGAGAACCCAACAACAATCAGGGCCGTGGAAGAGTCTCGAGGCTTTCAAAGTACCTGTCATTTCCGAAGAATGTGAGAACCCAACAACACCATGGCCGTGGAAAGAGTCTTGAGACTTTCCACTTTGATGGCCAAATACCTTGTAGATACAGTGTACTTCACTTAGTTTCTCTTCATTCTTTTCGTTATTGAAATTAATAATCAGCACTGCTACCTGGCGTGTTTGGTATGTATTATTTTGGAAGGAAGCATCACATAGCATTGAACAAAGATCTCAAACATACTCACGATATGAAGAGTCTTAGTCCGGAAAACATAATATATGTCAGGT

Fln Alignment:

sp_v1.1_unigene15202___MDSYDNFKRHDNYYGDNLGDNASNYSRAMAIGSKIMIVAILLMFAVAFFAFGFLIYARYFLWXXXXXXXXXLEFVEQQDPPRLQRVGLSKSAIEAIPVFVYQSESHKEGLECAVCLCEFEENEKARQLPKCHHSFHIDCIDMWLQSHSTCPLCRSSALTDTAADSVVVLVSNEEAASGGASETNHQVSLPTVSEGNASVSMEPDL--CPSCRHEEVLQSPNYPTHMLFWATQNRVSSLSNSVVFDQGAASTSRKTLDKIIIDIPRRMDSFSSPRLLCCDDRQMFSPNGQSLKSPSIRLRSFKRLLSKGKKVIPPSPDDGRNIHIEQTDSSESQG
C0PQ51_______________MDSYGNFNG-DNFNGNNTG----NDSTAMAIGSKIMIVAILVLFAVVIFVFGLQIYERCLWGRRASFRRRSLHFVDEQDPLRLQRVGLGKSAIEAIPVFVYQSENHKEGLECAVCLCEFEENEKARLLPKCHHSFH-----------STCPLCRTSAQPDKPADSVVVRVGDEEAASEGASETNQRVLLPSVAEGNASTSMESDLDLCSSCRHDEVLPSPTYPTNMLFWATPKRVSSMSNSVFFEKGATSTSRKTLDKIIIDIPQRANSFSSPRLFCSDDQQVFSPSGQSLKSPSMRLRSLKRLLSKDKKVVPPSPDDRRNLHIEQGDSSQSRG

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
86	33		66		0.997452
220	66		33		0.997452
256		40		60	1.0
273		14		85	0.993533
291		85		14	0.993533
310		87	12		0.992554
445		90	10		0.90298
505		22	77		0.999999
524	77	22			0.999999
560	80		20		0.999996
563	90	10			0.90298
575			80	20	0.999996
585		44	55		1.0
633			71	28	1.0
634		71		28	1.0
649		83		16	0.994512
676		80		20	0.995493
678		40	60		1.0
692		33		66	1.0
705	66	33			0.997452
1001	33		66		0.997452
1078	20	80			0.995493
1394	70		30		1.0
1440	87			12	0.992554
1441		12	87		0.992554
1480	14		85		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain