SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15182

Length: 1025 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene15182 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	coated vesicle membrane protein, putative (EC:2.4.1.12)	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	40%
Blast2go	coated vesicle membrane	-	-	82%

Source	ECs	Term	Type	e value	Identity
Blast2go	Cellulose synthase (UDP-forming).	EC:2.4.1.12	-	0.0	82%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Starch and sucrose metabolism	00500		0.0	82%

Source	GOs	Term	Type	Identity
Blast2go	cellulose biosynthetic process	GO:0030244	Biological Process	82%
Blast2go	cellular cell wall organization	GO:0007047	Biological Process	82%
Blast2go	intracellular protein transport	GO:0006886	Biological Process	82%
Blast2go	protein transmembrane transporter activity	GO:0008320	Molecular Function	82%
Blast2go	cellulose synthase (UDP-forming) activity	GO:0016760	Molecular Function	82%
Blast2go	integral to membrane	GO:0016021	Cellular Component	82%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	82%
Blast2go	endomembrane system	GO:0012505	Cellular Component	82%

Source	InterPros	Term	Type	e value	Identity
Blast2go	GOLD	IPR009038	-	0.0	82%

Full-Lengther Next Prediction

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
234	14		85		0.993533
748	4		95		0.997494
749	95		4		0.997494
754	4			95	0.997494
756	92	7			0.999999
760		94	5		0.997984
768		5	94		0.997984
942		61		38	1.0
947		55	44		1.0
951		12	56		1.0
952	62	6			1.0
976		33		33	0.997753
978	66			33	0.997452
983	33	66			0.997452
989	66			33	0.997452
992		33	66		0.997452
993	33		66		0.997452
995		66		33	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain