SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15180

Length: 1840 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene15180

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	nuclear acid binding protein, putative	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	protein	-	-	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	0.0	77%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	0.0	77%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LRZ2

Fln msg:

Fln protein: MMQPTVGVAPPPPVAAPAIDPQQQQQQWMMMQQQMQPQQPQPQPPPQAGFWPPQHQPQPQHPQPQLMAQQYPQQPTSADEIRTLWVGDLQYWMDESYLHGCFGNSQEVVSVKIIRNKQTGQSEGYGFVEFASHAGAERALQTYNGAQMPSTEQFYRINWATFGIGEKRPEIGPDYPIFVGDLASDVTDYLLQETFRNRYQTVKGAKVVTDRVTGRSKGYGFVRFGDENEQVRAMTEMNGVFCSSRPMRIGPATTKKTTVFQQPYPKPAVPPQVVASDNDPNNTTIFVGGLDPTVTDDMLRSLFGQFGELVHVKIPVGKRCGFVQFNNRASAEEALQMLHGTVLGQQAIRLSWGRSPANKQTAGWVQPQQPDPNQWNGAYYGYGQGYDAGYGYAPQPQDPNMYSYAPYAYGNYQQQVN*

Protein Length: 419

Fln nts: CTTCGGAGCTCGCGCAGATTACAGAGAAACCCTAGTCTCGTGGATTCTCGATCGAAATCTGCACGGCCTGTATACAGTCTTAGCACATTCACTGAGCTGCCATAGGTTTCTTGGAACTCTTTGTTCCGCGGCTCTTGCGAGTTTCGCAGGATTTTGTTTGATTGTATTTTGAGGGTTTTTCTTTGCTTCGAGGGTTTTGTTTTCCCGTTTTTGTCCCCTTATTCTTTCAAGACATCTCAGA_-_ATGATGCAGCCAACCGTAGGTGTCGCTCCTCCCCCTCCTGTTGCTGCACCCGCGATCGATCCCCAGCAGCAGCAACAGCAGTGGATGATGATGCAGCAGCAGATGCAGCCTCAGCAGCCTCAGCCTCAGCCGCCTCCTCAGGCTGGGTTTTGGCCCCCGCAACACCAACCCCAACCGCAGCATCCCCAACCGCAGCTTATGGCTCAGCAATACCCGCAGCAGCCGACCTCAGCTGACGAGATTAGAACCCTGTGGGTTGGAGATTTGCAGTATTGGATGGATGAGAGTTATCTGCATGGCTGTTTTGGTAATAGCCAAGAGGTTGTTTCTGTTAAAATTATTCGCAATAAACAGACTGGACAATCAGAGGGTTATGGCTTTGTAGAGTTTGCAAGCCATGCAGGAGCTGAAAGAGCTTTGCAAACTTACAATGGTGCACAGATGCCCAGCACTGAACAATTTTACAGGATAAATTGGGCAACCTTTGGCATTGGAGAAAAGCGCCCTGAGATTGGACCTGATTATCCTATATTTGTTGGAGATTTAGCATCTGATGTGACAGACTATTTGTTGCAAGAGACATTCCGAAATAGATACCAAACTGTAAAAGGAGCCAAGGTTGTTACTGATAGGGTTACAGGCCGTTCAAAAGGATATGGGTTTGTAAGGTTTGGGGATGAGAATGAGCAAGTTCGGGCTATGACAGAGATGAATGGGGTGTTTTGTTCCTCAAGACCTATGCGAATAGGTCCTGCCACAACAAAGAAGACCACAGTTTTTCAGCAACCATATCCGAAACCGGCAGTTCCTCCTCAAGTAGTTGCCTCAGATAATGATCCAAATAATACAACTATATTTGTGGGTGGCTTAGACCCAACTGTGACAGATGATATGCTGAGATCGTTATTTGGTCAGTTTGGAGAACTTGTGCATGTCAAAATACCAGTGGGCAAACGTTGTGGATTTGTTCAGTTTAATAACAGGGCTTCTGCAGAGGAAGCATTGCAAATGCTACATGGTACAGTTCTTGGTCAGCAAGCCATTCGTCTTTCTTGGGGACGGAGTCCTGCAAACAAACAAACTGCTGGGTGGGTTCAACCCCAACAACCAGATCCAAATCAATGGAATGGAGCTTATTATGGTTATGGACAAGGATATGATGCAGGTTATGGTTATGCACCACAACCTCAGGATCCCAATATGTACAGTTATGCCCCTTATGCATATGGAAATTATCAGCAGCAGGTAAATTAG___TCTGGAGCATTTCCACTTGGCAAACCGGAAGCTATAGGTGTCCTCTATTCACTGTGCAAATTACAGCGGAGTCTGTCTTTGTAAGCTAGTGTATGTCTTTGTTTTGGTAGTTCAAAACTCTTAATTTATACTAGTAGGGATTAGTAATAGCCACAAAAATATTATAGCAGCAGTTCAATATTTTATTTTACTTAACTGTCGAAAACTCAAAACACATGGAGAATTGAAGTTTGTGATGTGTTTGATCACATTAGTATTTTATGCAAGATTACCAAATTACATGTGAACAGTTTGTAATTCTGTTGAGGGGTTCCATTAATGTATGTCTTCGTTTTGGTAGTTCAA

Fln Alignment:

sp_v1.1_unigene15180___TSADEIRTLWVGDLQYWMDESYLHGCFGNSQEVVSVKIIRNKQTGQSEGYGFVEFASHAGAERALQTYNGAQMPSTEQFYRINWATFGIGEKRPEIGPDYPIFVGDLASDVTDYLLQETFRNRYQTVKGAKVVTDRVTGRSKGYGFVRFGDENEQVRAMTEMNGVFCSSRPMRIGPATTKKTTVFQQPYPK---PAVPPQVVASDNDPNNTTIFVGGLDPTVTDDMLRSLFGQFGELVHVKIPVGKRCGFVQFNNRASAEEALQMLHGTVLGQQAIRLSWGRSPANK--QTAGWVQPQQPDPNQWN-XXXXXXXXXXXXXXXXXPQPQDPNMYSYAPYAYGNYQQQ
B8LRZ2_______________TSADEVRTLWVGDLQYWMDETYMQSCFGNNQEVVSVKIIRNKQTGQSEGYGFVEFASHAGAERFLQNHNGAQMPNTEQFYRLNWATFGIGEKRPEMGPDYPIFVGDLASDVTDYLLQETFRSRYQTVKGAKVVSDRVTGRSKGYGFVRFGDENEQVRAMTEMNGMFCSSRPMRTGPATTKKTTGFQQPYPKAAAAAVPPQVVASDNDPNNTTIFVGGLDPSVTDEMLRQLFGQFGELVHVKIPVGKRCGFVQFNNRASAEEALQMLHGTVLGQQAIRLSWGRSPANKQVQTPGWVQPQQPDPNQWNGAAYYGYGQGYDAGYGYAPQPQDPNMYSYAPYAYGNYQQQ

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
1153	33			66	0.997452
1157			33	66	0.997452
1257		88	11		0.923564
1796	88		11		0.999937

SSRs (tot: 1)

Start position	End position	Sequence	Length
1311	1323	CAAA CAAA CAAA C	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain