SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15176

Length: 2033 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene15176
CGTCGTGACCTTGGCTGTCACTCAGTCCAAGCGTCGTGATCTTGGCTGTCACTCAGGCTTGTCCAAGCTTTCAGTCTGTGTTTTCTTTTGATTATTTATTGCTGTATCCGCATTTCTTCAAAAGGACAGAGGTGTCTTCAAATATTGTCTCCAAATTCATTCAAGTGAGAGAACAGTGGAAAAAGAATTCGCTGCTGCCAGCGATGGCTTCTTCAAGGCTTTCGTCCATGGTGGTAAGAAATCTGATTGCAAGCCCCCAAGGCCTTGTTCCTAACGGGGCGCAGAGTGTATTTATCTTGGGCAGGATCCTCTTCAGCGGCCATGGAACTGGTACTGCGAGGTCTCATGGCAGCGCGTCTCTGGGAACCGGTGGGGATGCTGATTATTATCTTTCTTCCCAGGGACGAGATGTTTTTACCGGAGTCTTGAAGAGGGCAGAATTGAATTCAGGATCATATTGGAATTTGTCACCCTTTGTGTCGACGAGATCGGCAAGTACTGTTGCTGGGAAGGTTGCGGTCGATGATCAAATTGAGACTGCTGGTGGTGCTGTTAAGGTCATGGAGGCCGAGAAAATTACTGGAAAAGAAGACGAGGCTGCGATCGACAACCCCCCTGAGCATGAGATGGAGAAATTGAAGGACAAGGGATTGGCCTATTCAAGATACTGGGGGGTTTCTCCTTCCAAGGTCTCTCGGAAAGATGGATCGTCGTGGCCATGGAATTCATTCAGACCCTGGGAAACATACACTCCAGACTTGAGCATTGACTTGAAGAAGCATCACGTTCCAACGACATTTCTGGACAAGTTTGCTTTCTGGACTGTGAAGTCACTTAGATTTCCAACGGATTTGTTCTTTCAGCGGCGGTATGGTTGCCGAGCCATGATGCTGGAAACAGTGGCTGCTGTCCCGGGGATGGTTGGAGGAATGCTCCTCCACTGCAAGTCCCTCAGAAAATTTCAGCACAGTGGTGGATGGATAAAAGCTCTTTTAGAAGAAGCTGAGAATGAGAGGATGCACCTCATGACATTTATGGAGGTGGCAAAACCCAAGTGGTATGAGAGGGCCTTGGTCTTTACAGTGCAAGGAATCTTCTTCAATGCATACTTCCTCATGTACATCCTTTCCCCCAAACTTGCACACAGGATTACGGGTTATCTTGAAGAAGAAGCTATCCACTCCTACACTGAATTTCTCAAGGAGCTGGACAAAGGCAACATTCCAAACGTGCCAGCCCCTGCTATAGCTATAGATTACTGGAGGCTTCCCAAGGATTCAACTCTCAGAGATGTGGTTGTGGTAGTTAGGGCTGATGAGGCGCACCATCGCGACGTCAACCACTTTGCATCAGACATTCATTACCAAGGAAAAGAACTGAGGGAAGCTGCAGCTCCAATTGGTTACCATTAAACTCAGGGCTCTATATTTTTGCACGAAAATATGCTTTTCTGTTAATTAAGCCGCAGTGGAACTGTTCAACCCATGTCTATATACATATGGTATTTACTATTAGCTTGTGTATTAGAATTTGGTACCATAGAATATATGGATATCATAGGACAGGTTTGAAATCGGAGGGATAATGGACCATTCTTTCCCTTATTTTGACTGTGGAGTTTTTTAACTGTGAAATGTAGACCCTATCATTCCATTTCCATAAAAGTAGAAACGTCTTATACATATTTTAAAAAACCTTGTGCTGTACTGCGTTATCTTTAAAGTATATATAGATGTCTGAAGAATACAGAGCTTCGGCTAATGGCACATATTAGCAAAATTTTCAAGGTAATGTTCTTTCAAGTTAATCTTCTAGAAAAGATCAACTTTCTGCCATTACAGGATTCACGTAGCCCAAATGTATAAAACACACATTCTCAGAGTAATTTACCTGAGTGTAACTCGATTCTAGATTTTAGAATATTCCATGTAATTCAGATTTTTAGGATATTTTAGAATTTATCTTATCTGCAATACATTAGAATTTATCTGCAATACATAACTTAACGAGCCTCTGGACTCTGTATTCCATTC

Ace file of the UniGene sp_v1.1_unigene15176

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Alternative oxidase n=1 Tax=Picea sitchensis RepID=A9NRS5_PICSI	-	-	69%
FL-Next	sp=Alternative oxidase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	70%
Blast2go	alternative oxidase	-	-	87%

Source	GOs	Term	Type	Identity
Blast2go	cellular respiration	GO:0045333	Biological Process	87%
Blast2go	response to cold	GO:0009409	Biological Process	87%
Blast2go	respiratory gaseous exchange	GO:0007585	Biological Process	87%
Blast2go	transport	GO:0006810	Biological Process	87%
Blast2go	mitochondria-nucleus signaling pathway	GO:0031930	Biological Process	87%
Blast2go	electron transport chain	GO:0022900	Biological Process	87%
Blast2go	metal ion binding	GO:0046872	Molecular Function	87%
Blast2go	alternative oxidase activity	GO:0009916	Molecular Function	87%
Blast2go	mitochondrial inner membrane	GO:0005743	Cellular Component	87%
Blast2go	respiratory chain	GO:0070469	Cellular Component	87%
Blast2go	integral to membrane	GO:0016021	Cellular Component	87%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Alternative oxidase	IPR002680	-	0.0	87%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NRS5

Fln msg:

Fln protein: MASSRLSSMVVRNLIASPQGLVPNGAQSVFILGRILFSGHGTGTARSHGSASLGTGGDADYYLSSQGRDVFTGVLKRAELNSGSYWNLSPFVSTRSASTVAGKVAVDDQIETAGGAVKVMEAEKITGKEDEAAIDNPPEHEMEKLKDKGLAYSRYWGVSPSKVSRKDGSSWPWNSFRPWETYTPDLSIDLKKHHVPTTFLDKFAFWTVKSLRFPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRKFQHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFTVQGIFFNAYFLMYILSPKLAHRITGYLEEEAIHSYTEFLKELDKGNIPNVPAPAIAIDYWRLPKDSTLRDVVVVVRADEAHHRDVNHFASDIHYQGKELREAAAPIGYH*

Protein Length: 404

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTCCAAGCGTCGTGATCTTGGCTGTCACTCAGGCTTGTCCAAGCTTTCAGTCTGTGTTTTCTTTTGATTATTTATTGCTGTATCCGCATTTCTTCAAAAGGACAGAGGTGTCTTCAAATATTGTCTCCAAATTCATTCAAGTGAGAGAACAGTGGAAAAAGAATTCGCTGCTGCCAGCG_-_ATGGCTTCTTCAAGGCTTTCGTCCATGGTGGTAAGAAATCTGATTGCAAGCCCCCAAGGCCTTGTTCCTAACGGGGCGCAGAGTGTATTTATCTTGGGCAGGATCCTCTTCAGCGGCCATGGAACTGGTACTGCGAGGTCTCATGGCAGCGCGTCTCTGGGAACCGGTGGGGATGCTGATTATTATCTTTCTTCCCAGGGACGAGATGTTTTTACCGGAGTCTTGAAGAGGGCAGAATTGAATTCAGGATCATATTGGAATTTGTCACCCTTTGTGTCGACGAGATCGGCAAGTACTGTTGCTGGGAAGGTTGCGGTCGATGATCAAATTGAGACTGCTGGTGGTGCTGTTAAGGTCATGGAGGCCGAGAAAATTACTGGAAAAGAAGACGAGGCTGCGATCGACAACCCCCCTGAGCATGAGATGGAGAAATTGAAGGACAAGGGATTGGCCTATTCAAGATACTGGGGGGTTTCTCCTTCCAAGGTCTCTCGGAAAGATGGATCGTCGTGGCCATGGAATTCATTCAGACCCTGGGAAACATACACTCCAGACTTGAGCATTGACTTGAAGAAGCATCACGTTCCAACGACATTTCTGGACAAGTTTGCTTTCTGGACTGTGAAGTCACTTAGATTTCCAACGGATTTGTTCTTTCAGCGGCGGTATGGTTGCCGAGCCATGATGCTGGAAACAGTGGCTGCTGTCCCGGGGATGGTTGGAGGAATGCTCCTCCACTGCAAGTCCCTCAGAAAATTTCAGCACAGTGGTGGATGGATAAAAGCTCTTTTAGAAGAAGCTGAGAATGAGAGGATGCACCTCATGACATTTATGGAGGTGGCAAAACCCAAGTGGTATGAGAGGGCCTTGGTCTTTACAGTGCAAGGAATCTTCTTCAATGCATACTTCCTCATGTACATCCTTTCCCCCAAACTTGCACACAGGATTACGGGTTATCTTGAAGAAGAAGCTATCCACTCCTACACTGAATTTCTCAAGGAGCTGGACAAAGGCAACATTCCAAACGTGCCAGCCCCTGCTATAGCTATAGATTACTGGAGGCTTCCCAAGGATTCAACTCTCAGAGATGTGGTTGTGGTAGTTAGGGCTGATGAGGCGCACCATCGCGACGTCAACCACTTTGCATCAGACATTCATTACCAAGGAAAAGAACTGAGGGAAGCTGCAGCTCCAATTGGTTACCATTAA___ACTCAGGGCTCTATATTTTTGCACGAAAATATGCTTTTCTGTTAATTAAGCCGCAGTGGAACTGTTCAACCCATGTCTATATACATATGGTATTTACTATTAGCTTGTGTATTAGAATTTGGTACCATAGAATATATGGATATCATAGGACAGGTTTGAAATCGGAGGGATAATGGACCATTCTTTCCCTTATTTTGACTGTGGAGTTTTTTAACTGTGAAATGTAGACCCTATCATTCCATTTCCATAAAAGTAGAAACGTCTTATACATATTTTAAAAAACCTTGTGCTGTACTGCGTTATCTTTAAAGTATATATAGATGTCTGAAGAATACAGAGCTTCGGCTAATGGCACATATTAGCAAAATTTTCAAGGTAATGTTCTTTCAAGTTAATCTTCTAGAAAAGATCAACTTTCTGCCATTACAGGATTCACGTAGCCCAAATGTATAAAACACACATTCTCAGAGTAATTTACCTGAGTGTAACTCGATTCTAGATTTTAGAATATTCCATGTAATTCAGATTTTTAGGATATTTTAGAATTTATCTTATCTGCAATACATTAGAATTTATCTGCAATACATAACTTAACGAGCCTCTGGACTCTGTATTCCATTC

Fln Alignment:

sp_v1.1_unigene15176___MASSRLSSMVVRNLIASP-QGLVPNGAQSVFILGRILFSGHGTGTARSHGSASLGTGGDADYYLSSQGRDVFTGVLKRAEL-NSGSYWNLSPFVSTRSASTVAGKV-AVDDQIETAGGAVKVMEAEKITGKEDEAAIDNPPEHEMEKLKDKGLAYSRYWGVSPSKVSRKDGSSWPWNSFRPWETYTPDLSIDLKKHHVPTTFLDKFAFWTVKSLRFPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRKFQHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFTVQGIFFNAYFLMYILSPKLAHRITGYLEEEAIHSYTEFLKELDKGNIPNVPAPAIAIDYWRLPKDSTLRDXXXXXRADEAHHRDVNHFASDIHYQGKELREAAAPIGY
A9NRS5_______________MAFPRLSSMVVRNLIARRHQGLAPSRAGSEFIVGRFLYSGHGAAPARINSNSSLGAS-EAGYYVSSRVLYEFT-VTKRGELYKQGSYWNASSFVSARSASNASGKTHRIDDVFESADAGVTGIEKNNINEKKAETAISKP---NTEKLKEIGLPHSSYWGFYPTQISRQDGSPWPWNSFRPWETYTPNMSIDLKKHHVPKTFADKFAYWTVRAMRIPVDLFFKKRYDIRVMMLETVAAVPGMVGGMLLHCKSLRKFQHSAGWIKALLEEAENERMHLMTFMEVTKPNWFERALVFAVQGVFFNTYFLVYIISPKLAHRIVGYLEEEAVYSYTEFLKELDNGNIPNGPAPAIAIDYWRLPKDSTLRDVVMVVRADEAHHRDVNHFASDIHFQGRELREAAAPLDY

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
1446	87		12		0.999964
1496	84	15			1.0
1518	5		94		0.997984
1608			85	14	1.0
1667		25	75		0.996473
1948		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain