SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15175

Length: 2072 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene15175
CGTCGTGACCTTGGCTGTCACTCAGCATTCTCCGTTGGAGCAAATCGTCCTAATCTCGGTCCCCGCAATCCGTGGTTTTGTCAGTTCTGCGTTTCTTTTCTCCGCAGCAATGGCGCTTCTGGCCGAGAAAACTGTGTCCGGACGGGAATTCAAGGTGAAGGATCTGTCCCAGGCGGATTTTGGGAGGTTGGAAATTGAATTGGCCGAAGTTGAGATGCCTGGATTGATGGCCTGCAGAGCTGAGTTCGGCCCCGCTCAGCCCTTTAAGGGTGCCCGGATCACTGGGTCCCTTCACATGACCATCCAGACCGCGGTGCTCATTGAGACCCTCACAGCTCTGGGTGCTGAGGTGAGATGGTGCTCCTGCAACATTTTCTCCACGCAGGACCACGCCGCCGCAGCTATTGCCCGCGACAGCGCTGCGGTGTTCGCTTGGAAGGGGGAGACGCTGCAGGAGTACTGGTGGTGTACTGAAAGGGCTCTTGACTGGGGTCCAGGCGGTGGCCCTGATCTGATTGTTGATGACGGTGGTGATGCAACTTTGTTGATCCATGAGGGGGTCAAGGCCGAGGAGGAGTTTGCCAAGACCGGGAAGGTGCCAGATCCGGCGTCTACTACGAATCTGGAGTTTCAGATGGTTTTGGGATTGATCAAGGACAGCATCAAGGTGGATCCCTTGAGGTACCATAAGATGAAGGATAGATTGGTTGGTGTTTCTGAAGAGACAACTACTGGTGTTAAGAGGCTTTATCAGATGCAAGCCAGTGGGACATTGCTGTTCCCTGCTATCAATGTTAATGACTCTGTTACCAAGAGCAAGTTTGATAACTTATATGGATGTAGACACTCTCTCCCAGATGGTCTGATGAGAGCCACAGATGTCATGATAGCTGGTAAGGTTGCTGTTGTGTGTGGATATGGAGATGTTGGAAAGGGTTGTGCTGCAGCTCTAAAGGTTGCTGGAGCTAGAGTCATTGTTACAGAAATTGATCCAATCTGTGCCCTGCAAGCTCTTATGGAAGGTCTCCCTGTCCTTACTATAGAGGATGTAGTTAGTACTGCTGATATTTTTGTGACCACCACTGGCAACAAGGATATCATCATGGTTGACCACATGAGGAAAATGAAAAATAATGCCATTGTTTGCAACATTGGTCATTTTGACAACGAGATTGACATGCAAGGTCTTGAAACTTTCCCTGGTGTCAAGAAGATTACCATCAAGCCTCAGACGGATAGGTGGGTGTTCCCTGATACCAACAGTGGAATCATCGTTCTTGCAAAGGGACACCCAAGTTTTGTCATGTCTTGCTCCTTTACAAACCAGGTTATTGCTCAGTTGGAGCTCTGGAACGAGAAGAAGTCAGGGAAGTACGAGAAGAAGGTCTATGTGTTGCCTAAGCATCTAGACGAAAAGGTGGCTGCTCTGCATTTGCCTAAGTTGGGTGCTCATCTAACAAAGCTTTCTCCTGAACAGGCAGCGTATATCAACGTGCCCGTTGAGGGACCTTACAAGCCTGCCCACTACCGATACTGAAGAGAAATGGCATTTTTGGTGACTTGCTGGGCAAGTGGCAAGGCTCCTGGACAGTTGCCAGAAGGACGAATCCCCCTCCGTGGCCGGCTCCATTGTTTTGTTCCAATTTTAATAAAAAAATGCTGTAGTCATGTATGTCTGCTGAGTTTTTTACAGCAGCACCGAAAGATTTCCTGTTTAGTATGGTCTTATGATAGAAGTTGGTTGCCATAGAATTGGTATTCGAGGTTTCTCCATGATGTAGCTAGCTTTTGCATTACTGAGATTTTAGAACGCAAGCAAGATATACGGTTGTCTCTGGTTTTGACTTTTTTAACGAATTACTGAAATTTCAGAACTCAAGCAAGATATATGATTCCCTCGGGTTTTGACTTTTAAACGATTCAAGTGTATTTTTATCTGAGGACTGCAATTTAAATGACTGTAAGAATGTCATGGAGATGGATGCAGTATATCTGCTTTGAGAGTCTAATATAGAATTCATATTTGCCTTCTTCTGATGTGTGTTTTCCATTGGAATTTTAGAATGGACTTA

Ace file of the UniGene sp_v1.1_unigene15175

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Adenosylhomocysteinase n=14 Tax=Tracheophyta RepID=A9PIA2_POPTR	-	-	86%
FL-Next	sp=Adenosylhomocysteinase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	s-adenosyl-l-homocysteine hydrolase	-	-	94%

Source	ECs	Term	Type	e value	Identity
Blast2go	Adenosylhomocysteinase.	EC:3.3.1.1	-	0.0	94%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Cysteine and methionine metabolism	00270		0.0	94%
Blast2go	Metabolic pathways	01100		0.0	94%

Source	GOs	Term	Type	Identity
Blast2go	one-carbon metabolic process	GO:0006730	Biological Process	94%
Blast2go	adenosylhomocysteinase activity	GO:0004013	Molecular Function	94%
Blast2go	binding	GO:0005488	Molecular Function	94%

Source	InterPros	Term	Type	Identity
Blast2go	Adenosylhomocysteinase	IPR000043	-	94%
Blast2go	S-adenosyl-L-homocysteine hydrolase, NAD binding domain	IPR015878	-	94%
Blast2go	S-adenosyl-L-homocysteine hydrolase, conserved site	IPR020082	-	94%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LLL7

Fln msg:

Fln protein: MALLAEKTVSGREFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPAQPFKGARITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSAAVFAWKGETLQEYWWCTERALDWGPGGGPDLIVDDGGDATLLIHEGVKAEEEFAKTGKVPDPASTTNLEFQMVLGLIKDSIKVDPLRYHKMKDRLVGVSEETTTGVKRLYQMQASGTLLFPAINVNDSVTKSKFDNLYGCRHSLPDGLMRATDVMIAGKVAVVCGYGDVGKGCAAALKVAGARVIVTEIDPICALQALMEGLPVLTIEDVVSTADIFVTTTGNKDIIMVDHMRKMKNNAIVCNIGHFDNEIDMQGLETFPGVKKITIKPQTDRWVFPDTNSGIIVLAKGHPSFVMSCSFTNQVIAQLELWNEKKSGKYEKKVYVLPKHLDEKVAALHLPKLGAHLTKLSPEQAAYINVPVEGPYKPAHYRY*

Protein Length: 477

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGCATTCTCCGTTGGAGCAAATCGTCCTAATCTCGGTCCCCGCAATCCGTGGTTTTGTCAGTTCTGCGTTTCTTTTCTCCGCAGCA_-_ATGGCGCTTCTGGCCGAGAAAACTGTGTCCGGACGGGAATTCAAGGTGAAGGATCTGTCCCAGGCGGATTTTGGGAGGTTGGAAATTGAATTGGCCGAAGTTGAGATGCCTGGATTGATGGCCTGCAGAGCTGAGTTCGGCCCCGCTCAGCCCTTTAAGGGTGCCCGGATCACTGGGTCCCTTCACATGACCATCCAGACCGCGGTGCTCATTGAGACCCTCACAGCTCTGGGTGCTGAGGTGAGATGGTGCTCCTGCAACATTTTCTCCACGCAGGACCACGCCGCCGCAGCTATTGCCCGCGACAGCGCTGCGGTGTTCGCTTGGAAGGGGGAGACGCTGCAGGAGTACTGGTGGTGTACTGAAAGGGCTCTTGACTGGGGTCCAGGCGGTGGCCCTGATCTGATTGTTGATGACGGTGGTGATGCAACTTTGTTGATCCATGAGGGGGTCAAGGCCGAGGAGGAGTTTGCCAAGACCGGGAAGGTGCCAGATCCGGCGTCTACTACGAATCTGGAGTTTCAGATGGTTTTGGGATTGATCAAGGACAGCATCAAGGTGGATCCCTTGAGGTACCATAAGATGAAGGATAGATTGGTTGGTGTTTCTGAAGAGACAACTACTGGTGTTAAGAGGCTTTATCAGATGCAAGCCAGTGGGACATTGCTGTTCCCTGCTATCAATGTTAATGACTCTGTTACCAAGAGCAAGTTTGATAACTTATATGGATGTAGACACTCTCTCCCAGATGGTCTGATGAGAGCCACAGATGTCATGATAGCTGGTAAGGTTGCTGTTGTGTGTGGATATGGAGATGTTGGAAAGGGTTGTGCTGCAGCTCTAAAGGTTGCTGGAGCTAGAGTCATTGTTACAGAAATTGATCCAATCTGTGCCCTGCAAGCTCTTATGGAAGGTCTCCCTGTCCTTACTATAGAGGATGTAGTTAGTACTGCTGATATTTTTGTGACCACCACTGGCAACAAGGATATCATCATGGTTGACCACATGAGGAAAATGAAAAATAATGCCATTGTTTGCAACATTGGTCATTTTGACAACGAGATTGACATGCAAGGTCTTGAAACTTTCCCTGGTGTCAAGAAGATTACCATCAAGCCTCAGACGGATAGGTGGGTGTTCCCTGATACCAACAGTGGAATCATCGTTCTTGCAAAGGGACACCCAAGTTTTGTCATGTCTTGCTCCTTTACAAACCAGGTTATTGCTCAGTTGGAGCTCTGGAACGAGAAGAAGTCAGGGAAGTACGAGAAGAAGGTCTATGTGTTGCCTAAGCATCTAGACGAAAAGGTGGCTGCTCTGCATTTGCCTAAGTTGGGTGCTCATCTAACAAAGCTTTCTCCTGAACAGGCAGCGTATATCAACGTGCCCGTTGAGGGACCTTACAAGCCTGCCCACTACCGATACTGA___AGAGAAATGGCATTTTTGGTGACTTGCTGGGCAAGTGGCAAGGCTCCTGGACAGTTGCCAGAAGGACGAATCCCCCTCCGTGGCCGGCTCCATTGTTTTGTTCCAATTTTAATAAAAAAATGCTGTAGTCATGTATGTCTGCTGAGTTTTTTACAGCAGCACCGAAAGATTTCCTGTTTAGTATGGTCTTATGATAGAAGTTGGTTGCCATAGAATTGGTATTCGAGGTTTCTCCATGATGTAGCTAGCTTTTGCATTACTGAGATTTTAGAACGCAAGCAAGATATACGGTTGTCTCTGGTTTTGACTTTTTTAACGAATTACTGAAATTTCAGAACTCAAGCAAGATATATGATTCCCTCGGGTTTTGACTTTTAAACGATTCAAGTGTATTTTTATCTGAGGACTGCAATTTAAATGACTGTAAGAATGTCATGGAGATGGATGCAGTATATCTGCTTTGAGAGTCTAATATAGAATTCATATTTGCCTTCTTCTGATGTGTGTTTTCCATTGGAATTTTAGAATGGACTTA

Fln Alignment:

sp_v1.1_unigene15175___EKTVSGREFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPAQPFKGARITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWKGETLQEYWWCTERALDWGPGGGPDLIVDDGGDATLLIHEGVKAEEEFAKTGKVPDPASTTNLEFQMVLGLIKDSIKVDPLRYHKMKDRLVGVSEETTTGVKRLYQMQASGTLLFPAINVNDSVTKSKFDNLYGCRHSLPDGLMRATDVMIAGKVAVVCGYGDVGKGCAAALKVAGARVIVTEIDPICALQALMEGLPVLTIEDVVSTADIFVTTTGNKDIIMVDHMRKMKNNAIVCNIGHFDNEIDMQGLETFPGVKKITIKPQTDRWVFPDTNSGIIVLAK----------GHPSFVMSCSFTNQVIAQLELWNEKKSGKYEKKVYVLPKHLDEKVAALHLPKLGAHLTKLSPEQAAYINVPVEGPYKPAHYRY
B8LLL7_______________EKTVSGREYKVKDMSQADFGRLEIELAEVEMPGLMACRAEFGPAQPFKGARITGSLHMTIQTAVLIETLAALGAEVRWCSCNIFSTQDHAAAAIARDSAAVFAWKGETLQEYWWCTERALDWGPGGGPDLIVDDGGDATLLIHEGVKAEEEFAKTGKVPDPESTTNLEFQMVLGLIKESMKVDPLRYHRMKERLVGVSEETTTGVKRLYQMQASGTLLFPAINVNDSVTKSKFDNLYGCRHSLPDGLMRATDVMIAGKVAVVCGYGDVGKGCAAALKVAGARVIVTEIDPICALQALMEGLPVLTLEDVVSTADIFVTTTGNKDIIMLDHMRKMKNNAIVCNIGHFDNEIDMQGLETFPGVKKITIKPQTDRWVFPDTNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWNERKSGKYEKKVYVLPKHLDEKVAALHLPKLGARLTKLSPDQAEYINVPVEGPYKPAHYRY

SNPs (tot: 36)

Position	A %	C %	G %	T %	Probability
299	80		20		0.995493
400	90		10		0.90298
764	93	4		2	0.970804
768	2		93	4	0.970804
772	95	4			0.994598
782	4	95			0.995055
877	94		5		0.998894
940		9		90	0.999898
943	9			90	0.999898
945		90		9	0.999898
961		10		90	0.999919
1008	84			15	1.0
1064			87	12	0.992554
1065	87	12			0.992554
1066			12	87	0.992554
1067	87	12			0.992554
1068	14			85	0.993533
1069			14	85	0.993533
1071			14	14	0.984337
1072	14			85	0.993533
1079		85	14		0.993533
1080	85		14		0.993533
1097		40		60	1.0
1205		33		66	0.997452
1532		75	25		0.996473
1533		75	25		0.996473
1599		88	11		0.923564
1601	88			11	0.923564
1605			88	11	0.923564
1606		11	88		0.923564
1609			88	11	0.923564
1610	88	11			0.923564
1680		90		10	0.90298
1765		13		86	1.0
2035		13	6	80	0.999961
2038	11	22		66	0.999999

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain