SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15172

Length: 1160 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene15172

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	40S ribosomal protein S12 n=4 Tax=Picea sitchensis RepID=A9NQ79_PICSI	-	-	95%
FL-Next	sp=40S ribosomal protein S12; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	40s ribosomal protein s12	-	-	93%

Source	ECs	Term	Type	e value	Identity
Blast2go	Protein-synthesizing GTPase.	EC:3.6.5.3	-	0.0	93%

Source	GOs	Term	Type	Identity
Blast2go	translation	GO:0006412	Biological Process	93%
Blast2go	structural constituent of ribosome	GO:0003735	Molecular Function	93%
Blast2go	small ribosomal subunit	GO:0015935	Cellular Component	93%
Blast2go	mitochondrion	GO:0005739	Cellular Component	93%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Ribosomal protein S12e	IPR000530	-	0.0	93%
Blast2go	Ribosomal protein L7Ae/L30e/S12e/Gadd45	IPR004038	-	0.0	93%

Full-Lengther Next Prediction

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
329		75		25	0.996473
821	4	95			0.997494
879		89	3		0.998304
915		13		86	0.999973
959	42	57			1.0
1028	45		54		1.0
1095	10		90		0.90298
1096		90	10		0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain